Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  207 bits (526), Expect = 2e-57
 Identities = 128/335 (38%), Positives = 200/335 (59%), Gaps = 14/335 (4%)

Query: 270 HSSLIYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDV------ASGQGDLTKRLDTNT 323
           H  L+ + + V+L ++ +  L       +G L+R++  +      A  + DL+ R+  ++
Sbjct: 309 HMMLMMSALAVVLFLVAMMGL-----SVMGYLNRSVVHIENQMRRAREEFDLSTRITLDS 363

Query: 324 DMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQL 383
             E   L   FN      +  I  +K    ++    ++    +++    +AQ   E EQ+
Sbjct: 364 TDELGSLGNAFNGMMNDFEAVIHQVKTNSLKVTDAVKRMESHSNQMRHDVAQGHSEAEQV 423

Query: 384 ATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEV 443
           A+AM EM+ T +++A+NA  AA+A+ +A++ ++ G+K V +T ++I AL++ I+ A   +
Sbjct: 424 ASAMTEMSATVSQIASNAVEAASASGKANQEARTGNKEVGNTGKTISALASEIDAAAIAI 483

Query: 444 KGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQ 503
             L+     I ++L+VI+ IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LAQR Q
Sbjct: 484 TKLDTDIQGIVSVLEVISGIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRAQ 543

Query: 504 QSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNM 563
            STT+IR M E+L+ GA     AM+  +  A  +VQ+   A E L+RI   +  I  MN 
Sbjct: 544 SSTTDIRTMTERLKEGARVAVDAMSRGQTQAQASVQEVNHAGEELRRIVDYVSVIDSMNE 603

Query: 564 QIASAAEEQSLVAEEINTNTVKIKDL---STQVAD 595
           QIA+A  EQS VAEE+N N ++I ++   + QVAD
Sbjct: 604 QIAAATHEQSAVAEEVNRNALRISEIYQNTHQVAD 638



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 35/206 (16%), Positives = 85/206 (41%), Gaps = 11/206 (5%)

Query: 411 ADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLL 470
           A  + +D  K  +     + ++   + ++++E+    + T N   +L +    +    +L
Sbjct: 266 AKTSPEDWFKASTGRINLLYSVENVLAKSLDELTDARLQTANWHMMLMM----SALAVVL 321

Query: 471 ALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNES 530
            L A +  +  G   R    + +++R   +    ST    +  ++L S  +A +  MN+ 
Sbjct: 322 FLVAMMGLSVMGYLNRSVVHIENQMRRAREEFDLSTRITLDSTDELGSLGNAFNGMMNDF 381

Query: 531 KYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLS 590
           +          Q+   SL ++  A++R+   + Q+     +    AE++ +   ++    
Sbjct: 382 EAVIH------QVKTNSL-KVTDAVKRMESHSNQMRHDVAQGHSEAEQVASAMTEMSATV 434

Query: 591 TQVADSAKSASMAMEVQTENVREQGK 616
           +Q+A +A  A+ A     +  R   K
Sbjct: 435 SQIASNAVEAASASGKANQEARTGNK 460