Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  215 bits (548), Expect = 4e-60
 Identities = 131/342 (38%), Positives = 201/342 (58%), Gaps = 7/342 (2%)

Query: 274 IYTVIGVLLSIIGLSF---LIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAIL 330
           I  V+ +L++++ + F   +I+ +M+P+  +S AI  + + + DLT R DT  D E   +
Sbjct: 269 ISIVVFILITLVLIGFTLAIIRSIMEPVQRISDAISRIEATK-DLTLRCDTKVDDEIGQI 327

Query: 331 AKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEM 390
           A+ FN   E+ Q  I+ +      + H  ++    +  ++  + +QL E + +ATA+ EM
Sbjct: 328 ARHFNSMVESFQSLIREVLTSVEVVNHSCQELSENSMRASEGVGRQLNETDMVATAITEM 387

Query: 391 AVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVAT 450
             T  E+A+N + AA  A    + +Q G   V  T   I AL+A++  + + V  LE  +
Sbjct: 388 GATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEKIQALAAQLTDSAQVVSELEKDS 447

Query: 451 GNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIR 510
             I ++L VI  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ+ST EI 
Sbjct: 448 ETIGSVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAMRTQESTEEIA 507

Query: 511 NMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAE 570
            +I+ LQS   ++   M  ++    ++  +A  A   L++I   +  I DM+ QIA+A E
Sbjct: 508 GIIQTLQSRTRSIVQLMEATQRQGIESADQAASAGALLEQINADVTNIMDMSTQIAAAIE 567

Query: 571 EQSLVAEEINTNTVKIKDL---STQVADSAKSASMAMEVQTE 609
           EQS+VA E+N N V I+D+   S Q AD    AS  ++ +T+
Sbjct: 568 EQSMVASEVNKNVVVIRDIAAESAQAADENAKASDDVKARTQ 609



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 22/122 (18%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 491 VADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQR 550
           V DE+  +A+         +++I ++ +    V+ +  E             L+  S++ 
Sbjct: 320 VDDEIGQIARHFNSMVESFQSLIREVLTSVEVVNHSCQE-------------LSENSMRA 366

Query: 551 IRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTEN 610
             G  +++++ +M +A+A  E     +EI +NT    + +    D+A+   + +E   E 
Sbjct: 367 SEGVGRQLNETDM-VATAITEMGATIDEIASNTELAAERAGNTHDNAQQGQVGVEHTIEK 425

Query: 611 VR 612
           ++
Sbjct: 426 IQ 427