Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  224 bits (572), Expect = 6e-63
 Identities = 141/367 (38%), Positives = 212/367 (57%), Gaps = 13/367 (3%)

Query: 265 VDDLRHS--SLIYTVIGVLLS-----IIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTK 317
           VDD++    + IY  + + ++     I+ L  + + +  P+     A E++A G+GDLT 
Sbjct: 183 VDDIQEEMQAFIYKYLLICIAVWLPVILILGVISRSISAPMADTIAAFENIARGEGDLTL 242

Query: 318 RLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAM---A 374
           RL+ +   E   +A  FN F   +Q  +     + A + H  E     A  SA A    A
Sbjct: 243 RLEESGRDELKQVAASFNEFVAKIQALVN---SVSASVTHSRELAEGLADISAQASMVTA 299

Query: 375 QQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSA 434
               E + +ATA++EM++ ++EVA+NAQ AA +A  AD  + D   VV      I  LS 
Sbjct: 300 NMQAETQSVATAINEMSMASSEVASNAQLAADSAGSADGEADDTVAVVDGAVAKIKGLSN 359

Query: 435 RIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADE 494
            +E   +E + L++++G I  IL VI  IA+QTNLLALNAAIEAARAGE+GRGFAVVADE
Sbjct: 360 ELEVTADEAQALQISSGKIGQILDVIVGIAEQTNLLALNAAIEAARAGEAGRGFAVVADE 419

Query: 495 VRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGA 554
           VRTLA RTQ+ST EI  +IE +++   +V+A++  +K  ++  V +     E+LQ I+ +
Sbjct: 420 VRTLASRTQESTQEINAIIEAIRASVDSVNASVARAKAQSEQTVGETSQVVEALQTIKSS 479

Query: 555 IQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQ 614
           I++ISDMN+QIA+A EEQS V  E+N N  +I D+S +    ++      E       + 
Sbjct: 480 IRQISDMNIQIATATEEQSAVIAELNMNVTRINDISLENQQKSEEIGSTSEQIKSGSADL 539

Query: 615 GKLLNTF 621
             L++TF
Sbjct: 540 ESLISTF 546



 Score = 35.0 bits (79), Expect = 8e-06
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 15/152 (9%)

Query: 391 AVTATEVANNAQGAAAAAHEA-------DEASQDGSKVVSDTTRSIDALSARIEQAVEEV 443
           A+ A       +G A  A E         E++Q+ + ++     S+D+++A + +A  + 
Sbjct: 400 AIEAARAGEAGRGFAVVADEVRTLASRTQESTQEINAIIEAIRASVDSVNASVARAKAQS 459

Query: 444 KGLEVATGNI----ETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLA 499
           +     T  +    +TI   I  I+D    +A     ++A   E       + D    ++
Sbjct: 460 EQTVGETSQVVEALQTIKSSIRQISDMNIQIATATEEQSAVIAELNMNVTRIND----IS 515

Query: 500 QRTQQSTTEIRNMIEQLQSGASAVSAAMNESK 531
              QQ + EI +  EQ++SG++ + + ++  K
Sbjct: 516 LENQQKSEEIGSTSEQIKSGSADLESLISTFK 547