Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  222 bits (566), Expect = 3e-62
 Identities = 138/395 (34%), Positives = 215/395 (54%), Gaps = 23/395 (5%)

Query: 243 AQVPSESWYIGAVVDESIAFAMVDDLRHSS-----------LIYTVIGVLLSIIGLSFLI 291
           A VP + W +G         A V+  R              L++ ++ V ++ + +    
Sbjct: 163 ATVPGKDWILGTGAYTDDIDAQVESYREVMTKHMNDKAMMILLFALVLVAITAVVMLVAA 222

Query: 292 KVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGI 351
           + ++ P+  + + +ED+A G+GDLTKRLD     E A+L + FN F + LQ  I+ +   
Sbjct: 223 QRMVNPIHNMVQNLEDIAKGEGDLTKRLDVQGSDEIAMLGRAFNQFVDKLQGIIKDVARA 282

Query: 352 GAEIMHGTEQTVLGAHESASAMAQQL----QELEQLATAMHEMAVTATEVANNAQGAAAA 407
             E+  G +          +AMAQQL     E +Q+ TA+ EM+ TA+EVA +    A A
Sbjct: 283 TVEVKSGADNI----SSQTAAMAQQLISHNNETDQVVTAITEMSATASEVAMSTTQVAEA 338

Query: 408 AHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQT 467
              A +   +  + V  +   +  L A I+ A   +  L   +  I ++L VI  IA+QT
Sbjct: 339 TQAATQDVGNAQECVDSSLHEVSTLMAEIDMAAGHINSLNEQSQKINSVLSVIGGIAEQT 398

Query: 468 NLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAM 527
           NLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ ST EI  M+ +L +  S   ++M
Sbjct: 399 NLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQASTLEINEMLSELHNLVSLAVSSM 458

Query: 528 NESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIK 587
             S+ +   +V  ++  ++SL  +  A+  I+DM+ QIA+AA EQS V EEIN N   I+
Sbjct: 459 ESSQQSCHRSVTSSRAISDSLGAVTSAVTSINDMSTQIATAATEQSSVTEEINRNVFAIQ 518

Query: 588 DLSTQVADSAKSASMAMEVQTENVREQGKLLNTFI 622
           ++  ++  ++ SAS      ++ +  +G+ L+T +
Sbjct: 519 EIVNELLQASNSASDT----SQGLANEGRNLDTLV 549