Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  249 bits (636), Expect = 3e-70
 Identities = 187/636 (29%), Positives = 310/636 (48%), Gaps = 18/636 (2%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEI-ESLVQDSLMEMVKGVKNTIESDLAS 59
           +   +K+V A+ A ++  I L+S   +S  RE I +S +   L  ++  V N I++ L  
Sbjct: 4   LNIRRKVVLATLASVVLSIFLISLYAMSNSREIILDSTLNRELPAVLGEVANDIDAQLLM 63

Query: 60  KKGLAQSTTEILQLDPTNK------AFAKSVLESPNLKGSFLAIGLGYESDATV-VENDD 112
              +++     L+     +      + A  +    N++  F AI     S+ T      +
Sbjct: 64  PITVSKVMANNLEYQAMIRQGEPEASQATLIASLANIRQRFGAITAFLVSNTTGRYFTHE 123

Query: 113 GWEPNADYDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYD 172
           G          +  W+       K       VD   +   + I   V  +    G     
Sbjct: 124 GLFKTVSPSDDRDAWFYRFLGSGKDYDLSIDVDDLNQTPTLFINYLVQIEGKPSGVAGVG 183

Query: 173 VELTQLAQLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFL---PNVDLKE--- 226
           + L  LA  +    + + G +++T  +G    H  ++  G++ S      P   L +   
Sbjct: 184 LSLNSLADNIKQYKIGEQGRVYLTDGNGQIKIHGQSQFAGKQLSALGIKDPQALLSQQTF 243

Query: 227 GTQRIELDGKYYLVKFAQVPSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSIIG 286
            T   + +G   LV    +PS  WY+ A V +   F  ++       +  +I   + +  
Sbjct: 244 ATSEYDNNGVDTLVASRYIPSIGWYLIAEVPQDELFGAINKASWQLALMGLILAAIIMFT 303

Query: 287 LSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQ 346
            ++LI  L+ P G L+  ++ +  G+GDL+ RLD +   E   +A  +N F   L K +Q
Sbjct: 304 SAWLINRLISPFGELADMLKSIGEGEGDLSLRLDDSRQDETGSMAASYNQFVTYLSKTLQ 363

Query: 347 HLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAA 406
            +     ++    E+    A      +  Q+ ++EQ+ATA+HEM +TA E+A++A  AA 
Sbjct: 364 SVSATANDLFQAVERIDNQAKHMEHEINDQVSKIEQVATAIHEMGMTAQEIASSANNAAE 423

Query: 407 AAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQ 466
            A  AD++   G++ V +T  S+ ++S ++    E V  L     +I+T+L+VI  +++Q
Sbjct: 424 NAQVADQSVNQGNQSVQNTIASVASMSEQLLTTSETVSQLAEDASSIDTVLEVIRGVSEQ 483

Query: 467 TNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAA 526
           TNLLALNAAIEAARAGE GRGFAVVADEVRTLA R+  ST +IR++IE+LQ+  + V  A
Sbjct: 484 TNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSHASTEDIRHIIEKLQAKTTEVVNA 543

Query: 527 MNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKI 586
           + +S   +  + Q+A L+ E L  I   IQ +S+M+MQIA+A EEQS V  EIN +   I
Sbjct: 544 IGQSTNQSQQSQQEASLSGEHLHSIAENIQAMSEMSMQIATATEEQSNVVGEINPHVTAI 603

Query: 587 KDLSTQVADSAKSASMAMEVQTENVREQGKLLNTFI 622
            D+S   +D  +  S+       ++RE    LN  +
Sbjct: 604 ADISRSSSDVVRQTSL----DCSDLREMAVQLNELV 635