Pairwise Alignments
Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056
Subject, 632 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4
Score = 267 bits (683), Expect = 9e-76
Identities = 187/615 (30%), Positives = 308/615 (50%), Gaps = 22/615 (3%)
Query: 1 MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLASK 60
M F + +VA+ L+ + + ++ ++E + V D L + + + + +K
Sbjct: 1 MGFKKSLVASMVTLVALCLLISNWLSYVQIKEATIARVNDKLTGVTRNESAKVATWFGAK 60
Query: 61 KGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYES-DATVVENDDGWEPN-- 117
+L + + + +L G I G++ A E D W
Sbjct: 61 AQAMDELARHYRLGSYQDNYVNTARLATDLSG-VARIYFGFDDGSAYSTETGDKWLNGKA 119
Query: 118 --ADYDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVEL 175
YDPR RPWY K +L VT+ Y+D + +ISI + G + D+EL
Sbjct: 120 IPGKYDPRTRPWYQQGKATTQLDVTDIYIDDGSGHKVISILKNLGD-----GVVLGDIEL 174
Query: 176 TQLAQLVNSVNLFDAGYLFITTKDGVTIAHPNAEN-NGEKFSQF-LPNVDLK-----EGT 228
T L +V++++ + IT + G +A + +G +FS F LP V K E
Sbjct: 175 TYLHDVVSAID-YPGAVALITDQTGKVLASESPTLVSGSRFSDFGLPQVQQKIIGSDEVM 233
Query: 229 QRIELDGKYYLVKFAQVP---SESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSII 285
Q +DG L +P + W++ +D+S A+A+VD S+L+ + I +L +I
Sbjct: 234 QEYRIDGVDKLGFSKAIPLVNGKQWFLFIGLDKSNAYAVVDQALTSALVSSAIMLLCAIS 293
Query: 286 GLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRI 345
L ++ +L +P+ +L + +++ G GDLTKRL+ + + + ++ N F LQ +
Sbjct: 294 ILLGVLYLLYRPILSLKAMVTELSKGNGDLTKRLEIHCEDDLGQISMGINQFIANLQAMM 353
Query: 346 QHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAA 405
+ + A I E+ + ++ +E EQ+ A+ EM+ TA +VA N A
Sbjct: 354 REVLQASAHISGSVERLNGETETNRHILSAHTKETEQIVAAVEEMSATANDVAQNGSETA 413
Query: 406 AAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIAD 465
+ +E + +VV+ T +++ L +E +++ ++ T NI +LKVI DIAD
Sbjct: 414 SFTQLTNEQALASKQVVAQATETVNRLVREVEHTADKIGQIDRDTINITQVLKVIGDIAD 473
Query: 466 QTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSA 525
QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ ST EI + L+ +++
Sbjct: 474 QTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEETLSNLRDASNSAIH 533
Query: 526 AMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVK 585
+M +K T + + L I ++ +I+D+N QIA+AAEEQS V+ EI N
Sbjct: 534 SMEVTKQTCLETASTTERVATDLDAIGSSVNQINDLNTQIATAAEEQSSVSAEITRNMSA 593
Query: 586 IKDLSTQVADSAKSA 600
I D++ ++A S +S+
Sbjct: 594 ICDMANELARSGESS 608
Score = 34.7 bits (78), Expect = 1e-05
Identities = 42/204 (20%), Positives = 82/204 (40%), Gaps = 25/204 (12%)
Query: 428 SIDALSARIEQAVEEVKG-LEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGR 486
++ A+ + QA + G +E G ET +++ +T + AA+E A +
Sbjct: 348 NLQAMMREVLQASAHISGSVERLNGETETNRHILSAHTKETEQIV--AAVEEMSA--TAN 403
Query: 487 GFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTAD-------DAVQ 539
A E + Q T + + ++ Q V+ + E ++TAD D +
Sbjct: 404 DVAQNGSETASFTQLTNEQALASKQVVAQ---ATETVNRLVREVEHTADKIGQIDRDTIN 460
Query: 540 KAQLAN--------ESLQRIRGAIQ--RISDMNMQIASAAEEQSLVAEEINTNTVKIKDL 589
Q+ +L + AI+ R + A A+E +A +T +I++
Sbjct: 461 ITQVLKVIGDIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAARTQDSTAEIEET 520
Query: 590 STQVADSAKSASMAMEVQTENVRE 613
+ + D++ SA +MEV + E
Sbjct: 521 LSNLRDASNSAIHSMEVTKQTCLE 544
Score = 28.9 bits (63), Expect = 7e-04
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 514 EQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQS 573
EQ+ + +SA N+ + QL NE + + + ++ ++ E +
Sbjct: 389 EQIVAAVEEMSATANDVAQNGSETASFTQLTNEQALASKQVVAQATETVNRLVREVEHTA 448
Query: 574 LVAEEINTNTVKIKDLSTQVADSAKSAS-MAMEVQTENVR--EQGK 616
+I+ +T+ I + + D A + +A+ E R EQG+
Sbjct: 449 DKIGQIDRDTINITQVLKVIGDIADQTNLLALNAAIEAARAGEQGR 494