Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  265 bits (676), Expect = 6e-75
 Identities = 205/636 (32%), Positives = 325/636 (51%), Gaps = 56/636 (8%)

Query: 1   MRFSQKIV-AASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLAS 59
           +   QKI+   + A+LL  I +    Q S      + ++   +  ++  ++N I+ D++S
Sbjct: 10  LTIKQKILLTVTFAVLLSTILVGVISQRSAKNVVQQRMLGSEMPSLMMQIRNKIDLDISS 69

Query: 60  KKGLAQ---STTEILQL---------DPTNKAFAKSVLESPNLKGSFLAIGLGYESDATV 107
               A+   S+  +LQ          +P   A  K +    +L  +  A     +     
Sbjct: 70  LMNAAEQLASSRMLLQWLENGRPQEQEPQVVAQLKDITRQYHLAQASYA-----DRQTAA 124

Query: 108 VENDDGWEPNADYDPRKRPW---YVDAKRERKL-VVTEPYVDISTKKIIISIGTPVYQQS 163
               DG+    +  P +  W   Y D+ +ER L V TE   +I   K+ I+     YQQ 
Sbjct: 125 YYTQDGFL--RELTPAQDGWFFSYRDSGQERMLNVFTEANGEI---KLFIN-----YQQP 174

Query: 164 NFVGAMFYDVELTQLAQLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVD 223
           N  G +     L  + QL++S  + + G++++    G    HP+    G+   + L +  
Sbjct: 175 NGRGLVGLAKSLDDMVQLLDSFKIEETGFVYLVDAKGEVKLHPDPSQIGKTSLKSLYSAA 234

Query: 224 -----LKEGTQRI---ELDGKYYLVKFAQVPSESWYIGAVVDESIAFAMVDDLRHSSLIY 275
                L      +   E+ G+   V  + +PS  WY+ A V E+  FA++ D  +  LI+
Sbjct: 235 NIGSLLNRSDFNLIDTEIQGEKTFVASSYIPSMDWYLVAQVPEAEVFALLRDAVYQILIW 294

Query: 276 TVIGVLLSIIGLSFLIK-VLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDF 334
           T+I +    I L+ ++   + +P+  ++    D+  G+GDL +RL  N   E A LA+ F
Sbjct: 295 TLI-IAAGFIMLAIVVAGSVSRPIAQVAAMFRDIGEGEGDLRQRLPVNGKDEIAQLAQGF 353

Query: 335 NVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQ-------LATAM 387
           N F   +Q  +        E+   +EQ  L A + ++   Q L++  +       + TA+
Sbjct: 354 NSFISKIQDSV-------IEVAQTSEQLGLSAKDVSNQAQQTLEDSHEQKDRTMMVVTAI 406

Query: 388 HEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLE 447
           +EM  T  E+A+NA  AA AA +AD  S  G  VV+    +I+ LS  +EQ  E ++ L 
Sbjct: 407 NEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSHDVEQVGEVIESLA 466

Query: 448 VATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTT 507
             T +I  IL VI  I++QTNLLALNAAIEAARAGE+GRGFAVVADEVR LA RT  ST 
Sbjct: 467 THTKSIGGILDVIRAISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLASRTAASTN 526

Query: 508 EIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIAS 567
           E++ MI++LQS AS   +AM +S+  + + V     A++SL  I   I  ISDMN+Q+A+
Sbjct: 527 EVQGMIDKLQSEASRAVSAMAQSRARSHEGVTAVDEASQSLVGISKRIGLISDMNIQVAA 586

Query: 568 AAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMA 603
           A EEQS V E+IN N  +I D++ + A +A++A+ A
Sbjct: 587 ATEEQSTVVEDINRNVTEINDITQRTASTAQAAAQA 622



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 20/123 (16%)

Query: 493 DEVRTLAQ-------RTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLAN 545
           DE+  LAQ       + Q S  E+    EQL   A  VS   N+++ T +D       ++
Sbjct: 344 DEIAQLAQGFNSFISKIQDSVIEVAQTSEQLGLSAKDVS---NQAQQTLED-------SH 393

Query: 546 ESLQRIRGAIQRISDMNM---QIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASM 602
           E   R    +  I++M     +IAS A + ++ A++ +T +   + + T+  D+    S 
Sbjct: 394 EQKDRTMMVVTAINEMGATVNEIASNAAQAAVAAKDADTESNSGQVVVTRARDTINQLSH 453

Query: 603 AME 605
            +E
Sbjct: 454 DVE 456