Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  254 bits (650), Expect = 6e-72
 Identities = 200/623 (32%), Positives = 304/623 (48%), Gaps = 32/623 (5%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLASK 60
           +  S +IV   S LL  V++ +    LS    +I    Q  L ++ +    T  +++ S 
Sbjct: 4   LNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYE----TAVANIVSS 59

Query: 61  KGLAQSTTEILQLDPTNKA-FAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNAD 119
              AQ+   ++ L P  ++ FA+   E+   +   L + L  + D  V +      P   
Sbjct: 60  GQRAQAMATLISLTPEIQSNFAERDREALLQRTQPLFMRL--KQDFAVQQFQFHTPPATS 117

Query: 120 YDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIIS--------IG----TPVYQQSNFVG 167
           +    RP   +   +    + +  V+ +T+K  +S        +G     P+  Q    G
Sbjct: 118 FLRLHRP---EKFGDDLTAIRKTIVETNTQKQPLSGLEYGVEGLGIRGLVPMNYQGQHTG 174

Query: 168 AMFYDVELTQLAQLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEG 227
           ++ + +   Q     N  N + A    +  KDG  +            S  L  V   +G
Sbjct: 175 SVEFGMSFGQ-PFFDNFKNAYQAEITLLLPKDGNFVPFGGTFTTDTSASSELNKV--MQG 231

Query: 228 TQ---RIELDGKYYLVKFAQVPSESW----YIGAVVDESIAFAMVDDLRHSSLIYTVIGV 280
           T+    I+LDGK Y +    +   S      +   +D S +   + D+R   ++   I  
Sbjct: 232 TEVIRTIDLDGKSYALYRHGMQDYSGKTFGVLDIALDRSHSEQAMSDIRFKLIMIGFIAF 291

Query: 281 LLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCET 340
           L+      F+ K + +P+   + A+ D+A G+GDLT+R++  +  E A LA  FN F E 
Sbjct: 292 LIGTAIAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVKSKDEIAQLALAFNRFAEK 351

Query: 341 LQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANN 400
           +   +  +    + +    E+     +E+     +Q  E EQ+ATAM+EMA T  EVA+N
Sbjct: 352 IHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEVAHN 411

Query: 401 AQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVI 460
           A  AA AA  A E+++ G  +V     +I  L+  I  A + +  LE  T  I+++L VI
Sbjct: 412 ATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSVLVVI 471

Query: 461 NDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGA 520
            +IADQTNLLALNAAIEAARAGE GRGFAVVADEVRTLA RTQ ST+EI+ MIE LQ  A
Sbjct: 472 RNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEALQHSA 531

Query: 521 SAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEIN 580
            +  + MN S  T  + V     A E+L+ I  A+  IS MN+QIASAA EQ  V+ EIN
Sbjct: 532 KSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQCAVSAEIN 591

Query: 581 TNTVKIKDLSTQVADSAKSASMA 603
            N   I D++    +SA   + A
Sbjct: 592 KNVNNINDITINATESAVQTARA 614



 Score = 33.5 bits (75), Expect = 3e-05
 Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 498 LAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQR 557
           +A+   +   E  N +  +  G   ++  +     + D+  Q A   N   ++I   + +
Sbjct: 301 IAKSITRPIAETTNALNDIAEGEGDLTRRIEVK--SKDEIAQLALAFNRFAEKIHATVAQ 358

Query: 558 ISDMNMQIASAAEEQSLVAEE---------INTNTV--KIKDLSTQVADSAKSASMAMEV 606
           +SD    +A++AEE S +  E         + T  V   + +++  V + A +A+ A + 
Sbjct: 359 VSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQEVAHNATDAADA 418

Query: 607 QT--ENVREQGKLL 618
            T      E GKLL
Sbjct: 419 ATHASESTEHGKLL 432