Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (580), Expect = 7e-64
 Identities = 167/491 (34%), Positives = 247/491 (50%), Gaps = 36/491 (7%)

Query: 159 VYQQSNFVGAMFYDVELTQLAQLVNSVNLFDAGYLFITTKDGVTIAH--------PNAEN 210
           VY+Q    G M         A L+N       GY  +   +   +AH         +A+N
Sbjct: 61  VYRQDAASGKMREQEAQKAAASLINQTRYAGVGYFILIDDNNQILAHGESASMIGTSAQN 120

Query: 211 ----NGEKFSQFLPNVDLKEGTQRIELD-----GKYYLVKFAQV---PSESWYI--GAV- 255
               NG      L +   + G   +E        K    K A+    P   W +  GA  
Sbjct: 121 FTLPNGTNPLTTLLSQARQNGKSTLEYPIANPVSKIVEDKLAEARYYPQWGWTLITGAYL 180

Query: 256 --VDESIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLIKV---LMKPLGALSRAIEDVAS 310
             V ES+   MVD        Y +I  L+S+   +F + +   +  PL     A+ED+A 
Sbjct: 181 SDVKESLYEVMVD--------YLIIMFLISVPIFAFFLVLNHSITSPLNDAIEALEDIAQ 232

Query: 311 GQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESA 370
           G+GDL++RL T    E A LA  FN+F + +   + HL+ +G  + +  +  +L   ES 
Sbjct: 233 GEGDLSQRLSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKLLMLAVEESN 292

Query: 371 SAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSID 430
            +     +E   +ATA+++M  T  E+A+N Q AA AA      +Q    V+ +T R  +
Sbjct: 293 QSAEHIHRETGSVATAVNQMLSTTHEMASNTQQAADAATSVKSQAQQSKGVIDNTVRDTE 352

Query: 431 ALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAV 490
            L   ++ +    + L  A+G I +IL VI  IA+QTNLLALNAAIEAARAG  GRGFAV
Sbjct: 353 KLVQELKASEAITQKLGQASGQIGSILDVIRAIAEQTNLLALNAAIEAARAGSHGRGFAV 412

Query: 491 VADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQR 550
           VADEVR LA RTQ ST EI+ +I ++Q+G  +V  + ++++  +++   KAQ A +++  
Sbjct: 413 VADEVRALANRTQDSTNEIQKIISEIQTGVGSVMQSNSQTQRQSEELQAKAQEAGQAMAA 472

Query: 551 IRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTEN 610
           I   I  ISDMN Q+ASA EEQSLV EEIN N   I +L+     + +S S A +   + 
Sbjct: 473 ILELIAHISDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANESNSRAAQSLQDI 532

Query: 611 VREQGKLLNTF 621
            ++    L  F
Sbjct: 533 SQDMSHTLGQF 543