Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  231 bits (588), Expect = 1e-64
 Identities = 205/705 (29%), Positives = 331/705 (46%), Gaps = 94/705 (13%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVRE---EIESLVQDSLM-------------- 43
           +  S K++  +SAL L ++A+LS     T+ E   E+   VQ++L               
Sbjct: 4   LSISTKLLWITSALFLSIVAILSISLWWTLSEQNVELSHQVQETLQIETHDKLEARAGEY 63

Query: 44  -EMVKGVKNTIESDLASKKGLAQSTTEILQLDPTNKAFAKSVLESPN------------- 89
            EMV G  N       S  G+ +ST E L L       A + +   N             
Sbjct: 64  GEMVAGFINEAYRIPYSFAGIVESTAEELPLKRDRLELAIAAVLKKNTQISSMYAQFEAN 123

Query: 90  ----LKGSFLAIGLGYESDATVV------ENDDGWEPNA--------------DYDPRKR 125
               L   FL + + +   ++ V       NDDG   +               ++  R+ 
Sbjct: 124 GYDGLDSEFLNVNVSHSVASSGVLEIYYTRNDDGTVEHHQVEDSSEKYKTSLNEFGIRES 183

Query: 126 PWYVDAKRERKLVVTEPY---VDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQLV 182
            WY+ AK   K  + EPY   +      ++ S+     +   F+G +  DV L     L+
Sbjct: 184 EWYLCAKETLKPCLMEPYLYEITPGNTALMTSLTVSAVKHKQFIGVVGVDVNLPVFQVLI 243

Query: 183 N--SVNLFD--AGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQRIEL----- 233
           +  S +L+D  A    ++T+ G+ +A   A +  +K      ++D K   Q I L     
Sbjct: 244 DKLSKSLYDGQAKVTLLSTR-GLVVA---ASHYSKKARPLAESIDPKLAVQMIALHKNGG 299

Query: 234 ----DGKYYLVKFAQVP--SESWYIGAVVDESIAFAM-------VDDLRHS-SLIYTVIG 279
               D +  +     +P  +  W +   V +S+A          +DD+  S   I  ++G
Sbjct: 300 YMANDDEIIVAYPIDIPLANAEWSLAIQVPKSMALKSSILLNEKMDDMATSLGSILVIVG 359

Query: 280 V---LLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNV 336
           +   +L+++ +S +I+ ++ PL  +   +E++AS  GDLT+ ++ ++  E   L K FN 
Sbjct: 360 LAVSILAVVTISIVIRSVIAPLRLIQGRVENLASADGDLTQSIEVDSHAELIALGKGFNS 419

Query: 337 FCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATE 396
           F   L+  I  LK +  +    +  +   A  +  ++ +Q  E+E + TA++EM+ TA E
Sbjct: 420 FIHKLKDLISELKALAGQTQEESLSSAKIAELTRDSVHRQYGEIESVVTAVNEMSATALE 479

Query: 397 VANNAQGAAAAAHEADEASQDGSKVVSDTTRSID---ALSARIEQAVEEVKGLEVATGNI 453
           VA  ++  AA   E +  S++        T+++D    +S    QA   V  +  ++ NI
Sbjct: 480 VAKASEQTAA---ETEAMSRNVHLSEESLTKAMDYVTTMSQESMQAKVAVSKVAESSTNI 536

Query: 454 ETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMI 513
             IL+VI+ IA QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQ ST +I  +I
Sbjct: 537 SRILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLI 596

Query: 514 EQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQS 573
           + LQ    + SA +++    A  AV + + A  SL  +   I+ IS     IA+AAEEQS
Sbjct: 597 DALQKEVQSASAIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISAQVTHIAAAAEEQS 656

Query: 574 LVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLL 618
            V EE+N N   I D ++++A  A  A  +  V  E V++Q + L
Sbjct: 657 AVTEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQL 701