Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  298 bits (764), Expect = 4e-85
 Identities = 209/600 (34%), Positives = 308/600 (51%), Gaps = 20/600 (3%)

Query: 13  ALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLASKKGLAQSTTEILQ 72
           A+ + V  L+S      +R       Q  + ++       I   +  +K    S  + ++
Sbjct: 16  AVFITVAVLVSISSY-VIRNHAIDNTQGEIDQLANTFAEGIGLWMQDRKTAITSLKKTVE 74

Query: 73  LDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNADYDPRKRPWYVDAK 132
            DP N      +L++ N  G  L     +  +   +   D     A+YDPR+RPWY+DAK
Sbjct: 75  ADP-NVQITPYLLQAHNAMGFALTY---FGDEQGNMYRQDPALNTANYDPRERPWYMDAK 130

Query: 133 RERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQLVNSVNLFDAGY 192
               +V+T PYV  + KK +++I  PV       G    ++ + QL   V  + +   GY
Sbjct: 131 AANAMVMTAPYVSATLKKQVVTIAEPVMVSGRLFGVAAANLTIDQLTDAVQRLEVPGKGY 190

Query: 193 LFITTKDGVTIAHPNAENNGEKF----SQFLPNVDLKEGT----QRIELDGKYYLVKFAQ 244
             +    G+ I+HPN + N ++     S F P+   +       +  ELDG   LV  A 
Sbjct: 191 TLMVDTAGLIISHPNTQLNNQQLTKIDSHFTPSWLSQRANANTMEERELDGGTQLVYVAA 250

Query: 245 VPSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGV-LLSIIGLSF--LIKVLMKPLGAL 301
           VPS  W +  V+++    +    L   +   + +GV LL I GL    + K+  K L  +
Sbjct: 251 VPSTDWALIFVMNKQEIMSQATSL---AWWMSAVGVGLLVIFGLVLVAIFKMQFKDLERV 307

Query: 302 SRAIEDVASGQGDLTKRLDT-NTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTE 360
           + A+ D+A G GDLT R+ T N+  E  ILA  FN F E L   I  +  I  ++ +  +
Sbjct: 308 ALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHGMISRMHNIAGQLEYQAK 367

Query: 361 QTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSK 420
            +   A +++  +  Q  E+  +ATA+ EMA    E+A+NA+  A  A  A   S  G K
Sbjct: 368 GSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEHTAQTAQNAVSLSNHGQK 427

Query: 421 VVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAAR 480
            V  + +SI  L+  ++ A   +  L   +  I +IL  I+ IA+QTNLLALNAAIEAAR
Sbjct: 428 QVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGIAEQTNLLALNAAIEAAR 487

Query: 481 AGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQK 540
           AGE GRGFAVVADEVR L+QRT  ST EI+ MIE LQ  A     +M +S   A+ +V  
Sbjct: 488 AGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKAVKSMTQSHDMAETSVAD 547

Query: 541 AQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSA 600
           A  A+ESL +I  AI  ISDM  QIA+AAEEQ+ V  EIN NT  I+++S  ++  A+SA
Sbjct: 548 ANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNTESIREVSENLSIEAQSA 607