Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  260 bits (665), Expect = 1e-73
 Identities = 198/620 (31%), Positives = 304/620 (49%), Gaps = 26/620 (4%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIESLVQDSLMEMVKGVKNTIESDLASK 60
           +  S +IV   S LL  V++ +    LS    +I    Q  L ++ +    T  +++AS 
Sbjct: 4   LNISTRIVLGISLLLFAVMSFIMPLVLSEFSRQIRESEQRELHKLYE----TAVANIASS 59

Query: 61  KGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNADY 120
              AQ+   ++ L P  ++ + +  +   L    L +    + D  V +      P   +
Sbjct: 60  GQRAQAMATLISLTPEIQS-SFAARDHDELLQRTLPLFTRLKQDFAVQQFQFHTPPATSF 118

Query: 121 DPRKRPWYVDAKRERKLVVTEPYVDISTKKIIIS--------IG----TPVYQQSNFVGA 168
               RP   +   +    + +  V+ +T+K  +S        +G     P+  Q    G+
Sbjct: 119 LRLHRP---EKFGDDLTAIRKTIVETNTQKQPLSGLEYGVEGLGIRGLVPMNYQGQHTGS 175

Query: 169 MFYDVELTQLAQLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNV-DLKEG 227
           + + +   Q     +  N + A    +  KDG  +            +  L +V    E 
Sbjct: 176 VEFGMSFGQTF-FDHFKNAYQAEISLLLPKDGGFVPFGGTFTTDTSAASELESVMQGDEV 234

Query: 228 TQRIELDGKYYLVKFAQVPSESW----YIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLS 283
            + I+L+GK + +    +   S      +   +D S +   + D+R   ++  VI +L+ 
Sbjct: 235 IRTIDLNGKSFALYRHGIKDYSGKTFGVLDIALDRSHSEQAMSDIRLKLIMIGVIALLIG 294

Query: 284 IIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQK 343
                F+ K + +P+   + A+ D+A G+GDLT+R++  +  E A LA+ FN F E +  
Sbjct: 295 TAIAWFIAKSITRPIAETTDALNDIAEGEGDLTRRIEVKSKDEMAQLAQAFNRFAEKIHA 354

Query: 344 RIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQG 403
            +  +    + +    E+     HE+     +Q  E EQ+ATAM+EMA T  EVA+NA  
Sbjct: 355 TVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNEMAATVQEVAHNATD 414

Query: 404 AAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDI 463
           AA AA  A E+++ G  +V     +I  L+  I QA   +  LE  T  I+++L VI +I
Sbjct: 415 AADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERNTTQIDSVLVVIRNI 474

Query: 464 ADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAV 523
           ADQTNLLALNAAIEAARAGE GRGFAVVADEVRTLA RTQ STTEI+ MIE LQ  A A 
Sbjct: 475 ADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEIQQMIETLQQSAKAT 534

Query: 524 SAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNT 583
            ++MN S  T    V     A  +L+ I  A+  IS MN+QIASAA EQ  V+ EIN N 
Sbjct: 535 VSSMNTSTATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIASAANEQCAVSAEINKNV 594

Query: 584 VKIKDLSTQVADSAKSASMA 603
             I D++T   +SA   + A
Sbjct: 595 NNINDIATNATESAMQTARA 614