Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  231 bits (588), Expect = 1e-64
 Identities = 205/703 (29%), Positives = 326/703 (46%), Gaps = 90/703 (12%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQ---QLSTVREEIESLVQDSLM-------------- 43
           +  S K++  +SAL L ++A+LS      LS    E+ + VQ++L               
Sbjct: 4   LSISTKLLWITSALFLSIVAILSISLWWTLSDQNTELSNQVQETLQTETRDKLEARAGEY 63

Query: 44  -EMVKGVKNTIESDLASKKGLAQSTTEILQLDPTNKAFAKSVLESPN------------- 89
            EMV G  N       S  G+ +ST E L L       A + +   N             
Sbjct: 64  GEMVAGFINEAYRIPYSFSGMLESTAEELPLKRDRLELAVAAVLKKNNQISSMYAQFEPN 123

Query: 90  ----LKGSFLAIGLGYE--------------SDATVVEN--DDGWEPNA----DYDPRKR 125
               L   FL + + +                D TV  N  DD  E       ++  R+ 
Sbjct: 124 GYDGLDSEFLNVEVSHSVASSGSLEVYYTRNDDGTVEHNQVDDSAEKYVTTLNEFGIREA 183

Query: 126 PWYVDAKRERKLVVTEPY---VDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQLV 182
            WY+ AK   K  + EPY   +      ++ S+  PV +   F+G +  DV L     L+
Sbjct: 184 EWYLCAKETLKPCLMEPYLYEITPGNNALMTSLTVPVVKHKQFIGVVGVDVNLPVFQALI 243

Query: 183 N--SVNLFD--AGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQRIEL--DGK 236
           +  S +L+D  A    ++T+ G+ +A   A +  +K      ++D K  +Q + L  +G 
Sbjct: 244 DKLSKSLYDGQAKVTLLSTR-GLVVA---ASHYSKKARPLSESIDPKLASQIVALHKNGG 299

Query: 237 Y----------YLVKFAQVPSESWYIGAVVDESIAFAM-------VDDLRHS-SLIYTVI 278
           Y          Y +K     +E W +   V ++ AF         +D++  S   I  ++
Sbjct: 300 YMANDDEIIVAYPIKIPLAKAE-WSLAIQVPKAQAFKSSIELNDKMDEMATSLGSILLMV 358

Query: 279 GV---LLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFN 335
           G+   +L+++ +S +I+ ++ PL  +   +E +AS  GDLT+ +  +   E   L K FN
Sbjct: 359 GLAVSILAVVTISIVIRSIIAPLKMIQGRVEHLASADGDLTQSIVVDAHAELIALGKGFN 418

Query: 336 VFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTAT 395
            F   L+  I  LK +       +  +   A  +  ++ +Q  E+E + TA++EM+ TA 
Sbjct: 419 SFIHKLKDLISELKTLAGRTQEESLSSAQIAELTHDSVHRQYGEIESVVTAVNEMSATAL 478

Query: 396 EVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIET 455
           EVA  ++  AA         +   + ++     +  +S    QA   V  +  ++ NI  
Sbjct: 479 EVAKASEQTAAETEAMSRNVRLSEESLTKAMEYVTTMSQESMQAKVAVSKVAESSTNISR 538

Query: 456 ILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQ 515
           IL+VI+ IA QTNLLALNAAIEAARAGE GRGFAVVADEVR LA +TQ ST +I  +I+ 
Sbjct: 539 ILEVISSIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRALASKTQSSTDDISVLIDA 598

Query: 516 LQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLV 575
           LQ   ++ S  +++    A  AV + + A  SL  +   I+ IS     IA+AAEEQS V
Sbjct: 599 LQQEVNSASGIIDKGAERAQMAVSQTEQALTSLNSMVSQIEEISSQVTHIAAAAEEQSAV 658

Query: 576 AEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLL 618
            EE+N N   I D ++++A  A  A  +  V  E V++Q + L
Sbjct: 659 TEEVNRNITGISDSASELARLAGEAQQSSVVLAELVKQQHQQL 701