Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 545 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  223 bits (569), Expect = 1e-62
 Identities = 146/423 (34%), Positives = 225/423 (53%), Gaps = 21/423 (4%)

Query: 206 PNAENNGEKFSQFLPNVDLKEGTQRIELDGKYYLVKFAQVPSESWYIGAVVDESIAFAMV 265
           P A  NG+   ++     + +  +   ++ +YY       P   W +       I  A +
Sbjct: 135 PLARQNGKTMLEYPIANPVSKNIEDKLVEARYY-------PEWGWTL-------ITGAYL 180

Query: 266 DDLRHSS----LIYTVIGVLLSIIGLSFLIKV---LMKPLGALSRAIEDVASGQGDLTKR 318
            D++ S     + Y +I  L+S+   +F + +   +  PL     A+ED+A G+GDL++R
Sbjct: 181 SDVKQSLKAVIIDYLIIMFLISVPIFAFFLVLNHSITSPLNDAIDALEDIAQGEGDLSQR 240

Query: 319 LDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQ 378
           L T    E A LA  FN+F + +   + HL+ +G  + +  +Q +L   ES  +     +
Sbjct: 241 LSTQGKDEVAHLAHAFNLFAQKIGDMVGHLQPLGQSLDNDAKQLMLAVEESNQSAEHIHR 300

Query: 379 ELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQ 438
           E   +ATA+++M  T  E+A+N Q AA AA+     +Q    V+ DT R  + L   +  
Sbjct: 301 ETGSVATAVNQMLSTTHEMASNTQQAADAANSVKNQAQQSQAVIDDTVRDTEKLVQELRA 360

Query: 439 AVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTL 498
           +    + L  ++  I +IL VI  IA+QTNLLALNAAIEAARAG  GRGFAVVADEVR L
Sbjct: 361 SEVITQKLGQSSAQIGSILDVIRSIAEQTNLLALNAAIEAARAGSHGRGFAVVADEVRAL 420

Query: 499 AQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRI 558
           A RTQ ST EI+ +I  +Q G ++V  + ++++  +D+   KA+ A  ++  I   I  I
Sbjct: 421 ANRTQDSTNEIQKIISDIQMGVNSVMKSNSQTQTQSDELQAKAREAGNAMAAILQLIAHI 480

Query: 559 SDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLL 618
           SDMN Q+ASA EEQSLV EEIN N   I +L+     + +  S A +   +  ++    L
Sbjct: 481 SDMNTQLASATEEQSLVTEEINRNICNISELTEVSVKANEGNSRAAQSLQDISQDMSHTL 540

Query: 619 NTF 621
             F
Sbjct: 541 GQF 543