Pairwise Alignments

Query, 339 a.a., outer membrane protein assembly factor BamC from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., lipoprotein-34 NlpB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (248), Expect = 7e-26
 Identities = 96/357 (26%), Positives = 164/357 (45%), Gaps = 37/357 (10%)

Query: 14  VLVLSACSSSPTQRRQAKDDFDYLETTEFKPWVLPQGA-TPQFYPNYDIPQ---GAFHGG 69
           V  ++ACSS P +RRQA    DY++  +     +P+G  TP +   YD+P     A    
Sbjct: 11  VAAVAACSS-PLERRQANGGEDYVQAEQAPMLKIPEGLKTPPYNKEYDVPALGPKANPAL 69

Query: 70  VGNVVDIRPPQQVLELIPGARAERQNGEVTLWMLRQDE----AQKVWDTALKMIAERKIP 125
           VG  +DIRPP QVL +  G   E  +  + + +   D      Q+++       A++ IP
Sbjct: 70  VGKNLDIRPPLQVLPMAEGTHVEEGSDNIKIVVESIDNNVDLKQEIFTNLDDFFAKQAIP 129

Query: 126 LRKQT--DSMVETDWVD---------WVSEDEDVTIGSRYLMSMVETN---NRYGFKISL 171
           +R +      +ETDW++         W S D++  +  RY    VET          I L
Sbjct: 130 IRSRDFDKGSIETDWIESREVLESSLWGS-DKEYLLRQRYRFD-VETRPHGRTANIVIHL 187

Query: 172 IGWRE--NGQVQTV--STTNKERYNAFMTNLVTTRYDSDVRAEAARRAQELVKQIPITMG 227
           +   E  +G+ Q V  S  +K+RY   M N         V+ E   +A  L + + I + 
Sbjct: 188 VEHEEFYDGKEQKVMLSGEDKQRYTIDMLNSAIAYMS--VKREQTIQANRLKQTLGINVD 245

Query: 228 --SDRSGFPVIIARTPYDVLWQRLPELLPKMGFTIEERNQSQGTVKAKYAAPDDEFWQQV 285
             +   G     A+  Y  +W RL  +LP+MGF I + + ++G    K+   +  FW  +
Sbjct: 246 LITPEEGAAYWSAKAAYKQVWDRLRIVLPEMGFEISDMDSAKGLYFIKF-TDNSGFWSSL 304

Query: 286 -GVKPIELKSGTYTFLF--GDLGNRTSINVTDSAGKPVNEALLKEMVPVLSAVVDKK 339
                + LK G+Y  L   GD  + T I + D+  +P++  ++ ++   LS+++ ++
Sbjct: 305 WNNNQLSLKEGSYRLLLEDGDTPDETKIWLRDAEDQPLSNDVVSKVYESLSSLMKEE 361