Pairwise Alignments

Query, 377 a.a., succinyl-diaminopimelate desuccinylase from Vibrio cholerae E7946 ATCC 55056

Subject, 377 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Shewanella loihica PV-4

 Score =  292 bits (747), Expect = 1e-83
 Identities = 160/368 (43%), Positives = 221/368 (60%), Gaps = 6/368 (1%)

Query: 11  KELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQSPLFVFAGHTD 70
           +EL+ R S+TP DAGCQ  + ERL A+GF++     +  +N  A    +      AGHTD
Sbjct: 5   RELMRRPSITPEDAGCQQWLGERLVAMGFDVSHYQDKGVSNLLASFDERPAQLALAGHTD 64

Query: 71  VVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFL 130
           VVP G LS+W TPPF  T++DG L GRGA DMK  LA M+ AVE  IA +   + +  F+
Sbjct: 65  VVPPGDLSRWQTPPFAATLVDGMLIGRGAVDMKSGLAVMLAAVEDHIACYGLPKANWQFI 124

Query: 131 ITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNGRRGSITGDLKVK 190
           +TSDEEG   +GT  +VE L A++ L   C+V EP++    GDV+K GRRG+I+  L +K
Sbjct: 125 VTSDEEGEAEHGTRTLVERLKAQSRLPKYCVVAEPTADKQAGDVIKIGRRGAISARLTLK 184

Query: 191 GTQGHVAYPHLANNPVHKALPALAELAATQWDEGNAYFPPTSFQIPNLQAGTGASNVIPG 250
           G QGHVAYP  A N +H A   +  L A  WDEG+  FP TS Q+ ++ +G    N++PG
Sbjct: 185 GKQGHVAYPKNAVNALHMAARVMQALEALIWDEGSDDFPGTSLQVTHVDSGAFTDNIVPG 244

Query: 251 EFDVQFNFRFSTELTDEEIKRRVHSVLDAHGLDYD---VKWTLSGQPFLT---DTGELLA 304
             ++ FN R+S   ++  I  R+ + LD   L  D   ++W    QP+ T   D   L+A
Sbjct: 245 SCEICFNIRYSYRYSEAGIMARIQACLDGLSLGEDAISLRWERGCQPYHTQENDEQSLIA 304

Query: 305 AVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHKVNECVRIADLEKL 364
            V AA+ EV    P L T+GGTSDGRF++    QV+ELG  N TIH+VNE V +A + +L
Sbjct: 305 QVEAAIFEVTASFPRLSTSGGTSDGRFLSSPQTQVIELGLPNRTIHQVNERVELAQIVRL 364

Query: 365 TDMYQKTL 372
             +Y+  L
Sbjct: 365 YRIYRALL 372