Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  158 bits (399), Expect = 2e-43
 Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 16/222 (7%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA++++TN S+L+ Q +L+  +  L  + +RL +G RINSA DDAAGLQI+ RL   +RG
Sbjct: 1   MALSIHTNYSSLITQTNLSKTNNTLGTNQQRLGTGLRINSAADDAAGLQIATRLNAGVRG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           + +A+RN ND +S++QTAEGA  E T +LQRM+DL+ QSANG+N+  +R AL+ E   L 
Sbjct: 61  MAVAIRNTNDAVSMLQTAEGAFNEATDILQRMKDLATQSANGTNTQKDRDALEAEFVELG 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKA--SFQIGASSGEAVQLSLRN------MRSDSLEMG 172
            ELN IA  T +AG  LL+G  + A  +FQIGASS E + +++ +      +   +  + 
Sbjct: 121 KELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADTKIAAALTQMTTTVP 180

Query: 173 GFSYVAAALAD--------KQWQVTKGKQQLNISYVNAQGEN 206
           G S  A A+A              T+G    NI+ +N    N
Sbjct: 181 GLSVAAGAVATIDALETALDDLGATRGALGANINRLNHTANN 222



 Score = 69.7 bits (169), Expect = 9e-17
 Identities = 57/191 (29%), Positives = 76/191 (39%), Gaps = 24/191 (12%)

Query: 190 KGKQQLNISYVNAQGENENIQIQAKEGDDI----EELATYINGKTDKVSASVNEKGQLQL 245
           K +  L   +V    E  NI    K   D       LA  IN +    SA V        
Sbjct: 107 KDRDALEAEFVELGKELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADT 166

Query: 246 YIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTALKYVDGHR 305
            IA   T  T +  G                    +S A GA   +  ++TAL  +   R
Sbjct: 167 KIAAALTQMTTTVPG--------------------LSVAAGAVATIDALETALDDLGATR 206

Query: 306 SELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTSVLAQA 365
             LGA  NR  H  +NL N+ +N   +  RI DAD+A E+  M K  +L Q   S+L QA
Sbjct: 207 GALGANINRLNHTANNLANMKDNTEMAKGRIMDADFASESANMTKNSMLMQSGISMLKQA 266

Query: 366 KRQPKFVLFLL 376
            + P  V+ LL
Sbjct: 267 GQMPSMVMGLL 277