Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  303 bits (775), Expect = 7e-87
 Identities = 177/395 (44%), Positives = 248/395 (62%), Gaps = 19/395 (4%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA+TVNTN+ +L  QR+LNS+S  L  S++RLS+G+RINSAKDDAAGLQI+NRL +Q+ G
Sbjct: 1   MALTVNTNIPSLNTQRNLNSSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           LG+AVRNANDGIS+ QTAEGA+Q++T +LQRMRDL+LQSANGSNS +ER AL  E+  L 
Sbjct: 61  LGVAVRNANDGISLAQTAEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLK 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAA 180
            EL+RI+ TT+F GR+LL+G F  ASFQ+G+++ E + + +  M S SL    F   +  
Sbjct: 121 KELDRISNTTTFGGRQLLDGSFGVASFQVGSAANEIISVGIAEMSSKSLSAKFFENTSPK 180

Query: 181 LADKQWQVTKGKQQLNISYVN--AQGENENIQIQAKEGDDIEELATYINGKTDKVSASVN 238
            A      T G+  +  + VN  A     N+ +   E    +++A  IN     V A V 
Sbjct: 181 AAVATTVTTAGEIDVGFT-VNGKAYAVTANVAVGDDEKTVNQKIAAAINDTNSGVGAFVK 239

Query: 239 EKGQLQLYI----AGKETSGTLSFS---------GSLANELQMNLLG---YEAVDNLDIS 282
           +   L +      AG  +   LS +           + N     L      + V  +D+ 
Sbjct: 240 DDNTLSIVSRETEAGANSLSALSIAISTTAGKIPAGVTNPAAATLAATATSQKVSGVDLL 299

Query: 283 SAGGAQRAVSVIDTALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYA 342
           SA  AQ+AV V D A++ +D  R++LGA+QNRF + I+NL N+ EN++A+  RI+D D+A
Sbjct: 300 SAENAQKAVLVFDKAIQAIDAQRADLGAVQNRFDNTIANLQNISENVSAARGRIEDTDFA 359

Query: 343 KETTQMIKQQILQQVSTSVLAQAKRQPKFVLFLLR 377
            ET  + K QILQQ  T++LAQAK+ P+ VL LL+
Sbjct: 360 AETANLSKNQILQQAGTAILAQAKQLPQAVLSLLQ 394