Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., Flagellar biosynthesis protein FliC from Xanthomonas campestris pv. campestris strain 8004

 Score =  261 bits (668), Expect = 2e-74
 Identities = 171/401 (42%), Positives = 243/401 (60%), Gaps = 24/401 (5%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA  +NTNV +L AQR+LN+ S  +  S+++LSSG RI SA  DAAGL IS R  TQ+RG
Sbjct: 1   MAQVINTNVMSLNAQRNLNTNSSSMALSIQQLSSGKRITSASVDAAGLAISERFTTQIRG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L +A RNANDGIS+ QTAEGAM E    LQR+R+LS+QSAN +NSA +R AL  E+  L 
Sbjct: 61  LDVASRNANDGISLAQTAEGAMVEIGNNLQRIRELSVQSANATNSATDREALNSEVKQLT 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQL-SLRNMRSDSLEMGGF-SYVA 178
            E++R+A  TSF G KLLNG F  A FQ+GA +G+ + + S+ +   DSL    F + V+
Sbjct: 121 SEIDRVANQTSFNGTKLLNGDFSGALFQVGADAGQTIGINSIVDANVDSLGKANFAASVS 180

Query: 179 AALADKQWQVTKGKQQLNISYVNAQGENENI---QIQAKEGD---DI-EELATYINGKTD 231
            A        +     + +++ +A G  +++    I+   GD   DI +++A+ IN K D
Sbjct: 181 GAGVTGAATASGSLSGITLAFKDASGAAKSVAVADIKIASGDTAADINKKVASAINDKLD 240

Query: 232 KVS--ASVNEKGQLQL--YIAGKE-------TSGTLSFSGSLANELQMNLLGYEA--VDN 278
           +    AS++  G ++L    AG++       TSG    +     +      G  A  + +
Sbjct: 241 QTGMYASIDTSGNVKLESLKAGQDFTSLSGGTSGAAGITAGAGIQTASAASGSTASTLSS 300

Query: 279 LDISSAGGAQRAVSVIDTALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKD 338
           LDIS+  GAQ+A+ ++D AL  V+  R+++GA+QNRF   I+NL    ENL AS SRI D
Sbjct: 301 LDISTFSGAQKALEIVDKALTSVNSSRADMGAVQNRFTSTIANLAATSENLTASRSRIAD 360

Query: 339 ADYAKETTQM--IKQQILQQVSTSVLAQAKRQPKFVLFLLR 377
            DYAK T ++   + QILQQ  T++LAQAK  P+ VL LL+
Sbjct: 361 TDYAKTTAELTRTRTQILQQAGTAMLAQAKSVPQNVLSLLQ 401