Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., Flagellin, C-terminal:Flagellin, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  170 bits (431), Expect = 4e-47
 Identities = 84/161 (52%), Positives = 126/161 (78%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA+TVNTNV++L  Q++L+ AS+ L+ S+ RLSSG +I S+KDDAAGL I+ ++ +Q++G
Sbjct: 1   MALTVNTNVTSLSVQKNLSRASDALSTSMGRLSSGLKIMSSKDDAAGLNIATKINSQIKG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
             +A++NANDG+SI QTAEGA+QE+T +LQRMR+L++QS N SNSA +RVAL +E   ++
Sbjct: 61  QTMAIKNANDGMSIAQTAEGALQESTNILQRMRELAVQSRNDSNSATDRVALNKEFTQMS 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSL 161
            EL RIA +T+  G+ L++G     +FQ+G++SG + Q+SL
Sbjct: 121 SELTRIANSTNLNGKNLIDGSASTMTFQVGSNSGASNQISL 161



 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 9/159 (5%)

Query: 223 ATYINGKTDKVSASVNEKGQLQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDIS 282
           +T +NGK       ++       +  G  +  +   S SL+     N LG  +   +  S
Sbjct: 129 STNLNGKN-----LIDGSASTMTFQVGSNSGASNQISLSLSASFDANTLGVGSAITIVGS 183

Query: 283 SAGGAQR----AVSVIDTALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKD 338
            +  A+     +++ ID+AL+ ++  RS+LGA QNR    ISNL N++EN +A+  RI+D
Sbjct: 184 DSAAAETNFSASIAAIDSALQTINNTRSDLGAAQNRLSSTISNLQNINENASAALGRIQD 243

Query: 339 ADYAKETTQMIKQQILQQVSTSVLAQAKRQPKFVLFLLR 377
            D+A ET Q+ KQQ LQQ STS+LAQA + P  VL LL+
Sbjct: 244 TDFAAETAQLTKQQTLQQASTSILAQANQLPSAVLKLLQ 282