Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., FliC/FljB family flagellin from Rahnella sp. WP5

 Score =  223 bits (567), Expect = 1e-62
 Identities = 158/442 (35%), Positives = 229/442 (51%), Gaps = 81/442 (18%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA  +NTN  +L+ Q +LN +   L+ ++ERLSSG RINSAKDDAAG  I+NR  + + G
Sbjct: 1   MAQVINTNTLSLMTQNNLNKSQSALSTAIERLSSGLRINSAKDDAAGQAIANRFTSNING 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L  A RNANDGIS+ QT EG++ E    LQR+R+LS+Q+ANG+NS ++  ++Q+E+ +  
Sbjct: 61  LTQASRNANDGISVAQTTEGSLSEINNNLQRIRELSVQAANGTNSDSDLTSIQDEITSRL 120

Query: 121 DELNRIAETTSFAGRKLL-NGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAA 179
            E++R++  T F G  +L + Q MK   Q+GA+ G+ + + L+ + S +L + GFS  + 
Sbjct: 121 SEIDRVSGQTQFNGVNVLASNQTMK--IQVGANDGQTIDIDLQKIDSTTLGLNGFSVASN 178

Query: 180 ALADKQWQVTKGKQQLNISYVNAQGENENIQIQAKE---GDDIEEL-------------A 223
           AL          K    I+ V A G  +N+ + A     G D  +L             A
Sbjct: 179 AL----------KTSDAITQVGASGSLKNVDLSAAATSLGLDASKLSLKNVQTAAGAATA 228

Query: 224 TY-INGKTDKVSASVNE-KGQLQL-------------YIAGKETSGTLSFSGSLANELQM 268
           TY ++  T   +ASV++  G + L               AG +T   +            
Sbjct: 229 TYVVSDGTSNYAASVDDATGAVTLNTTDVSYTDTDNGVTAGTQTGKLVKVGADATGA--- 285

Query: 269 NLLGYEAVDNLDISSAGGA---------------------------------QRAVSVID 295
             +GY  V   D  +A GA                                    +  ID
Sbjct: 286 -AVGYVTVQGKDYKTAAGAIVDGGATGTANVASTIGDIASAANTNAYTGVATSDPLKAID 344

Query: 296 TALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQ 355
            A+  VD  RS LGA+QNRF  AI+NLDN   NL+++ SRI+DADYA E + M K QILQ
Sbjct: 345 AAIAKVDTFRSSLGAVQNRFDSAITNLDNTTTNLSSAQSRIQDADYATEVSAMSKAQILQ 404

Query: 356 QVSTSVLAQAKRQPKFVLFLLR 377
           Q  TSVL++A + P+ VL LL+
Sbjct: 405 QAGTSVLSKANQVPQSVLSLLQ 426