Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  179 bits (455), Expect = 6e-50
 Identities = 96/181 (53%), Positives = 130/181 (71%), Gaps = 1/181 (0%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA+TVNTNV++L AQ++LN++   L  S+ERLSSG RINSAKDDAAGL ISNRL +Q+RG
Sbjct: 1   MAITVNTNVTSLKAQKNLNASGSNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L + +RNAND ISI Q +EGAMQE T +LQRMRDLS+Q+ NG+NS A+  AL++EM AL 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQAENGANSTADLQALKDEMDALA 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKA-SFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAA 179
            E+  I   T+F   KLLNG F    +FQ+G   GE +++S+    + +L +   + + +
Sbjct: 121 TEITAIGTNTAFGDTKLLNGDFSAGKTFQVGHQDGEDIKVSVGKSDAAALSVNSLTVLTS 180

Query: 180 A 180
           A
Sbjct: 181 A 181



 Score = 93.6 bits (231), Expect = 6e-24
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 23/249 (9%)

Query: 143 MKASFQIGASSGEAVQLSLRNMRSDS---LEMG--------GFSYVAAALADKQWQVTKG 191
           + +  +I ++  +A  L++ N  +     LE+G          + ++     +Q  + + 
Sbjct: 32  LSSGLRINSAKDDAAGLAISNRLNSQVRGLEVGMRNANDAISIAQISEGAMQEQTNMLQR 91

Query: 192 KQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSASVNEKGQLQLYIAGKE 251
            + L+I   N  G N    +QA + D+++ LAT I       +      G  +L      
Sbjct: 92  MRDLSIQAEN--GANSTADLQALK-DEMDALATEITAIGTNTAF-----GDTKLLNGDFS 143

Query: 252 TSGTLSFSGSLANELQMNLLGYEA----VDNLDISSAGGAQRAVSVIDTALKYVDGHRSE 307
              T         ++++++   +A    V++L + ++ G   A++ ID A+K +D  R++
Sbjct: 144 AGKTFQVGHQDGEDIKVSVGKSDAAALSVNSLTVLTSAGRASALTKIDAAIKKIDTSRAK 203

Query: 308 LGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTSVLAQAKR 367
           LGA+QNR  H ISN  N   N+A + SRI D D+AKET+ M K Q+LQQ  +++LAQA +
Sbjct: 204 LGAVQNRLAHNISNSANTQANVADAKSRIVDVDFAKETSAMTKNQVLQQTGSAMLAQANQ 263

Query: 368 QPKFVLFLL 376
            P+  L LL
Sbjct: 264 LPQVALSLL 272