Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  182 bits (461), Expect = 1e-50
 Identities = 111/254 (43%), Positives = 155/254 (61%), Gaps = 13/254 (5%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           MA+ VNTNV+++ AQ++LN++S+ L  S+ERLSSG RINSAKDDAAGL ISNRL +Q+RG
Sbjct: 1   MAINVNTNVTSMKAQKNLNTSSQNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L + +RNAND ISI Q +EGAMQE T +LQRMRDLS+QS NG+NS A+  AL++EM  L 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQSENGANSTADLQALKDEMDQLA 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKAS-FQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAA 179
           +E+  I  +T+F   KLL G+F     FQ+G   GE V +S+  + +  L +   + + +
Sbjct: 121 EEITAIGNSTAFGNTKLLTGEFSAGKLFQVGHQDGEDVTISVGTLNAGVLSVNSLTVLTS 180

Query: 180 ALADKQWQVTKGKQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSASVNE 239
           A  D       GK    I  ++ Q        +AK G     LA  I+   +  +   + 
Sbjct: 181 AGRDS----AIGKIDAAIKVIDTQ--------RAKLGAVQNRLAHNISNSANTQANVADA 228

Query: 240 KGQLQLYIAGKETS 253
           K ++      KETS
Sbjct: 229 KSRIVDVDFAKETS 242



 Score =  101 bits (252), Expect = 2e-26
 Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 19/247 (7%)

Query: 143 MKASFQIGASSGEAVQLSLRNMRSDS---LEMG--------GFSYVAAALADKQWQVTKG 191
           + +  +I ++  +A  L++ N  +     LE+G          + ++     +Q  + + 
Sbjct: 32  LSSGLRINSAKDDAAGLAISNRLNSQVRGLEVGMRNANDAISIAQISEGAMQEQTNMLQR 91

Query: 192 KQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKT--DKVSASVNEKGQLQLYIAG 249
            + L+I   N      ++Q    E D + E  T I   T          E    +L+  G
Sbjct: 92  MRDLSIQSENGANSTADLQALKDEMDQLAEEITAIGNSTAFGNTKLLTGEFSAGKLFQVG 151

Query: 250 KETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTALKYVDGHRSELG 309
            +    ++ S    N       G  +V++L + ++ G   A+  ID A+K +D  R++LG
Sbjct: 152 HQDGEDVTISVGTLNA------GVLSVNSLTVLTSAGRDSAIGKIDAAIKVIDTQRAKLG 205

Query: 310 AMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTSVLAQAKRQP 369
           A+QNR  H ISN  N   N+A + SRI D D+AKET+ M K Q+LQQ  +++LAQA + P
Sbjct: 206 AVQNRLAHNISNSANTQANVADAKSRIVDVDFAKETSTMTKNQVLQQTGSAMLAQANQLP 265

Query: 370 KFVLFLL 376
           +  L LL
Sbjct: 266 QVALSLL 272