Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., flagellin domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  115 bits (287), Expect = 2e-30
 Identities = 104/379 (27%), Positives = 166/379 (43%), Gaps = 89/379 (23%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           M++ +N N+ A+ A  +L+ +   L  S+ RLSSG R+ +A DDAAGL I   +   +  
Sbjct: 1   MSLVINHNLMAMNATNNLSLSYGKLATSVRRLSSGLRVGTAADDAAGLAIRELMRADIAS 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L    RNAND IS++QTA+GA+    + L RM++L+ Q+A G+ ++ +R+ +  E  A+ 
Sbjct: 61  LNQGARNANDAISLIQTADGALGVIDEKLIRMKELAEQAATGTYTSDQRLIIDSEYQAMA 120

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAA 180
            E+ RIA +T F G  LLNG         GA  G  ++ + +      +  G     A  
Sbjct: 121 SEITRIANSTDFNGVHLLNGHLS------GAHDGSGIEATGKL----KVHFGS----AND 166

Query: 181 LADKQWQVTKGKQQLNISYVNAQ---GENENIQIQAKEGDDIEELATYINGKTDKVSASV 237
            A+  + +  G    +   V AQ   G+ ++I  Q+     +E L   I  K DK+ AS+
Sbjct: 167 CAEDYYYIKIGNATASALGVGAQAADGKGKSISTQSAAQAALEGLTNAIISK-DKIRASL 225

Query: 238 NEKGQLQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTA 297
                                 G+L N L+        + NL I +              
Sbjct: 226 ----------------------GALQNRLE------NTISNLQIQA-------------- 243

Query: 298 LKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQV 357
                     L A ++R                     I D D + E T+ ++QQIL Q 
Sbjct: 244 --------ENLQAAESR---------------------ISDVDVSMEMTEFVRQQILSQS 274

Query: 358 STSVLAQAKRQPKFVLFLL 376
           + ++L+QA   P+  L LL
Sbjct: 275 AVAMLSQANSLPRLALNLL 293