Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., flagellin (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  116 bits (290), Expect = 9e-31
 Identities = 94/305 (30%), Positives = 147/305 (48%), Gaps = 41/305 (13%)

Query: 1   MAMTVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           M++ +N N+ A+ A R+L  +   L  S  RLSSG R+N+A DDAAGL I   +   +  
Sbjct: 1   MSLVINHNMMAMNAARNLTDSYGRLATSTRRLSSGLRVNTAADDAAGLAIRELMRADIST 60

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           L   +RNAND IS++QTA+GA+Q   + L RM++L+ Q+A G+ ++ +R+ ++ E  A+ 
Sbjct: 61  LRQGIRNANDAISMIQTADGALQIIDEKLIRMKELAEQAATGTYNSDQRLMIESEYQAMA 120

Query: 121 DELNRIAETTSFAGRKLLNGQF--------------MKASFQIGASSGE----------- 155
            E+ RIA  T F G  LLNG                +K  F  G  S E           
Sbjct: 121 SEITRIANATDFNGIHLLNGSLSGVHNGSVLQQSGALKIHFGTGNDSAEDYYYIEIGGAT 180

Query: 156 AVQLSLRNMRSDSLEMGGFSY------VAAALADKQWQVTKGKQQLNISYVNAQGEN--E 207
           A  L L N  +   E GG++        AA  A  Q  ++K K + ++  +  + EN   
Sbjct: 181 ASMLGLGNASALGTEAGGYTISTQSAAQAALAAIDQAIISKDKIRASLGALQNRLENTIS 240

Query: 208 NIQIQAKEGDDIEELATYINGKTDKVSASVNEKGQLQLYIAGKETSGTLSFSGSLANELQ 267
           N+ IQA+     E   + ++  T+      N+       I  +     LS + SL  ++ 
Sbjct: 241 NLSIQAENLQSSESRISDVDVATEMTEFVRNQ-------ILTQSAVAMLSQANSLP-QMA 292

Query: 268 MNLLG 272
           M L+G
Sbjct: 293 MKLIG 297



 Score = 78.2 bits (191), Expect = 3e-19
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 10/160 (6%)

Query: 226 INGKTDKV--SASVNEKGQLQLYIAGKETSGT----LSFSGSLANELQM---NLLGYEAV 276
           +NG    V   + + + G L+++      S      +   G+ A+ L +   + LG EA 
Sbjct: 138 LNGSLSGVHNGSVLQQSGALKIHFGTGNDSAEDYYYIEIGGATASMLGLGNASALGTEA- 196

Query: 277 DNLDISSAGGAQRAVSVIDTALKYVDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRI 336
               IS+   AQ A++ ID A+   D  R+ LGA+QNR ++ ISNL    ENL +S SRI
Sbjct: 197 GGYTISTQSAAQAALAAIDQAIISKDKIRASLGALQNRLENTISNLSIQAENLQSSESRI 256

Query: 337 KDADYAKETTQMIKQQILQQVSTSVLAQAKRQPKFVLFLL 376
            D D A E T+ ++ QIL Q + ++L+QA   P+  + L+
Sbjct: 257 SDVDVATEMTEFVRNQILTQSAVAMLSQANSLPQMAMKLI 296