Pairwise Alignments

Query, 378 a.a., flagellin E from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., flagellin domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 60.1 bits (144), Expect = 1e-13
 Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 3/136 (2%)

Query: 4   TVNTNVSALVAQRHLNSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRGLGI 63
           ++ TN SA+VA + L S +  L+++ + +S+G  + +AKD+AA   IS  +E  ++G   
Sbjct: 3   SILTNNSAMVALQTLKSINSNLSKTQDEISTGKSVATAKDNAAIWSISKVMEADVKGFKA 62

Query: 64  AVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALNDEL 123
              + + G S +  A  A +  T LL  ++   + S        +R  +Q ++ AL +++
Sbjct: 63  ISESLSLGESTVAVARNASETVTDLLTEIKGKIVAS---QEENVDRAKIQTDIDALKEQI 119

Query: 124 NRIAETTSFAGRKLLN 139
             +     F G+ L+N
Sbjct: 120 GSVISAAQFNGKNLVN 135



 Score = 51.6 bits (122), Expect = 5e-11
 Identities = 77/377 (20%), Positives = 155/377 (41%), Gaps = 59/377 (15%)

Query: 2   AMTVNTNVSALVAQRHL-NSASEMLNQSLERLSSGNRINSAKDDAAGLQISNRLETQMRG 60
           ++T   N + LV    L +SA+  ++   ++ S  N   SA    A   +SN +   +  
Sbjct: 198 SLTNTANTTDLVLANDLADSATLNISFGDQQFSYTNTTGSA---IAVADLSNIVAAGLSN 254

Query: 61  LGIAVRNANDGISIMQTAEGAMQETTQLLQRMRDLSLQSANGSNSAAERVALQEEMAALN 120
           LG+          +  T++G    T     +   +++Q   GS+S A  V +    A + 
Sbjct: 255 LGVE--------GVTTTSDGVDTVTIASTNKFEAIAIQ---GSSSGATTVDVNGAGAGVE 303

Query: 121 DELNRIAETTSFAGRKLLNGQFMKASFQIGASSGEAVQLSLRNMRSDSLEMGGFSYVAAA 180
           + L   AET S  G     G           + G+  Q++L            F+YVA  
Sbjct: 304 ETLVARAETVSLGGAGNTGGV---------VNEGDGFQIALGGQ--------AFNYVAKD 346

Query: 181 LADKQWQVTKGKQQLNISYVNAQGENENIQIQAKEGDDIEELATYINGKTDKVSASVNEK 240
             D    V  G ++     V   G  E I+++    DD            D  +  ++  
Sbjct: 347 -GDTLNDVATGLKR-----VLDAGGLEGIEVKVNISDD---------PTIDPPTIQIDND 391

Query: 241 GQLQLYIAGKETSGTLSFSGSLANELQMNLLGYEAVDNLDISSAGGAQRAVSVIDTALKY 300
           G   + +   + +  ++  G         L+G   +D +D+++  GA+ A++ I++ ++ 
Sbjct: 392 GATAVALTVDDGADGVASGG---------LVG---LDGIDVTTQEGAENALANIESLIET 439

Query: 301 VDGHRSELGAMQNRFQHAISNLDNVHENLAASNSRIKDADYAKETTQMIKQQILQQVSTS 360
                ++ G++Q+R +     +  + ++L +    + DAD  + + ++   Q+ QQ+ T 
Sbjct: 440 SIDAAAQFGSVQSRIETQSDFIGKLTDSLKSGIGSLVDADMEEASARLQALQVQQQLGTQ 499

Query: 361 VLAQAKRQPKFVLFLLR 377
            L+ A + P+ +L L R
Sbjct: 500 SLSIANQAPQNILALFR 516