Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  153 bits (387), Expect = 5e-42
 Identities = 78/167 (46%), Positives = 114/167 (68%), Gaps = 2/167 (1%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA++++TN +++  Q  L+   N   T+ +RL +G +INSA DDAAGLQI+ RLN   RG
Sbjct: 1   MALSIHTNYSSLITQTNLSKTNNTLGTNQQRLGTGLRINSAADDAAGLQIATRLNAGVRG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           + VA+RN ND +S+ QTAEGA NE T+ILQRM+DL+ QSANG+N++ +R A++ E   L 
Sbjct: 61  MAVAIRNTNDAVSMLQTAEGAFNEATDILQRMKDLATQSANGTNTQKDRDALEAEFVELG 120

Query: 121 DELNRIAETTSFGGNKLLNG--TFSTKSFQIGADNGEAVMLTLKDMR 165
            ELN IA  T + G+ LL+G    +  +FQIGA + E + + + D +
Sbjct: 121 KELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADTK 167



 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 192 ANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKASVNEKGQLQIFAGNNK 251
           A DI   +KD+       T   K+ D +E     +  + + +  +    G   +  G   
Sbjct: 85  ATDILQRMKDLATQSANGTNTQKDRDALEAEFVELGKELNNIATNTKYAGDALLDGGT-- 142

Query: 252 VTGDVAFSGGLAGALNMQAGTAETVDTIDVTSV----------GGAQQSVAVIDSALKYV 301
           +  D+ F  G + A  M    A+T     +T +           GA  ++  +++AL  +
Sbjct: 143 LAADINFQIGASSAEVMTVAIADTKIAAALTQMTTTVPGLSVAAGAVATIDALETALDDL 202

Query: 302 DSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSV 361
            + R  LGA  NR NH  +NL N+ +N   +K RI D DFA E+  +TK+ +L Q+  S+
Sbjct: 203 GATRGALGANINRLNHTANNLANMKDNTEMAKGRIMDADFASESANMTKNSMLMQSGISM 262

Query: 362 LAQAKQAPNAALSLLG 377
           L QA Q P+  + LLG
Sbjct: 263 LKQAGQMPSMVMGLLG 278