Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  313 bits (802), Expect = 5e-90
 Identities = 185/396 (46%), Positives = 252/396 (63%), Gaps = 23/396 (5%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTN+ ++  QR L  ++NA  TSM+RLS+G +INSAKDDAAGLQI+NRL  Q  G
Sbjct: 1   MALTVNTNIPSLNTQRNLNSSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L VAVRNANDGIS+AQTAEGA+ ++TNILQRMRDL+LQSANGSNS SER A+  E+  L 
Sbjct: 61  LGVAVRNANDGISLAQTAEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLK 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAAE 180
            EL+RI+ TT+FGG +LL+G+F   SFQ+G+   E + + + +M S +         + +
Sbjct: 121 KELDRISNTTTFGGRQLLDGSFGVASFQVGSAANEIISVGIAEMSSKSLSAKFFENTSPK 180

Query: 181 GKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDD----IEEVATYINGQTDMVKAS 236
                    AG  D+ FT   ++G    +T N   GDD     +++A  IN     V A 
Sbjct: 181 AAVATTVTTAGEIDVGFT---VNGKAYAVTANVAVGDDEKTVNQKIAAAINDTNSGVGAF 237

Query: 237 VNEKGQLQIF-----AGNNKVTG-DVAFSGGL----AGALNMQA------GTAETVDTID 280
           V +   L I      AG N ++   +A S       AG  N  A       T++ V  +D
Sbjct: 238 VKDDNTLSIVSRETEAGANSLSALSIAISTTAGKIPAGVTNPAAATLAATATSQKVSGVD 297

Query: 281 VTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKSRIKDTD 340
           + S   AQ++V V D A++ +D+ RA+LGA QNRF++ I+NL NI+ENV+A++ RI+DTD
Sbjct: 298 LLSAENAQKAVLVFDKAIQAIDAQRADLGAVQNRFDNTIANLQNISENVSAARGRIEDTD 357

Query: 341 FAKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           FA ET  L+K+QIL QA +++LAQAKQ P A LSLL
Sbjct: 358 FAAETANLSKNQILQQAGTAILAQAKQLPQAVLSLL 393