Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., Flagellar biosynthesis protein FliC from Xanthomonas campestris pv. campestris strain 8004

 Score =  268 bits (684), Expect = 3e-76
 Identities = 172/404 (42%), Positives = 247/404 (61%), Gaps = 32/404 (7%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA  +NTNV ++ AQR L   +++   S+++LSSG +I SA  DAAGL IS R   Q RG
Sbjct: 1   MAQVINTNVMSLNAQRNLNTNSSSMALSIQQLSSGKRITSASVDAAGLAISERFTTQIRG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           LDVA RNANDGIS+AQTAEGAM E  N LQR+R+LS+QSAN +NS ++R A+  E+  L 
Sbjct: 61  LDVASRNANDGISLAQTAEGAMVEIGNNLQRIRELSVQSANATNSATDREALNSEVKQLT 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVML-TLKDMRSDNRMMGGTSY--- 176
            E++R+A  TSF G KLLNG FS   FQ+GAD G+ + + ++ D   D+  +G  ++   
Sbjct: 121 SEIDRVANQTSFNGTKLLNGDFSGALFQVGADAGQTIGINSIVDANVDS--LGKANFAAS 178

Query: 177 VAAEGKDKDWKVQAGANDITFTLKDIDGNDQTITV---NAKEGD---DI-EEVATYINGQ 229
           V+  G           + IT   KD  G  +++ V       GD   DI ++VA+ IN +
Sbjct: 179 VSGAGVTGAATASGSLSGITLAFKDASGAAKSVAVADIKIASGDTAADINKKVASAINDK 238

Query: 230 TDM--VKASVNEKGQLQIFAGNNKVTGD-VAFSGGLAGALNMQAG------------TAE 274
            D   + AS++  G +++   + K   D  + SGG +GA  + AG            TA 
Sbjct: 239 LDQTGMYASIDTSGNVKL--ESLKAGQDFTSLSGGTSGAAGITAGAGIQTASAASGSTAS 296

Query: 275 TVDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKS 334
           T+ ++D+++  GAQ+++ ++D AL  V+S RA++GA QNRF   I+NL   +EN+ AS+S
Sbjct: 297 TLSSLDISTFSGAQKALEIVDKALTSVNSSRADMGAVQNRFTSTIANLAATSENLTASRS 356

Query: 335 RIKDTDFAKETTAL--TKSQILSQASSSVLAQAKQAPNAALSLL 376
           RI DTD+AK T  L  T++QIL QA +++LAQAK  P   LSLL
Sbjct: 357 RIADTDYAKTTAELTRTRTQILQQAGTAMLAQAKSVPQNVLSLL 400