Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., Flagellin, C-terminal:Flagellin, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  177 bits (450), Expect = 2e-49
 Identities = 97/210 (46%), Positives = 144/210 (68%), Gaps = 5/210 (2%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV +++ Q+ L+ A++A  TSM RLSSG KI S+KDDAAGL I+ ++N Q +G
Sbjct: 1   MALTVNTNVTSLSVQKNLSRASDALSTSMGRLSSGLKIMSSKDDAAGLNIATKINSQIKG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
             +A++NANDG+SIAQTAEGA+ E+TNILQRMR+L++QS N SNS ++RVA+ +E T ++
Sbjct: 61  QTMAIKNANDGMSIAQTAEGALQESTNILQRMRELAVQSRNDSNSATDRVALNKEFTQMS 120

Query: 121 DELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRS-DNRMMGGTSYVAA 179
            EL RIA +T+  G  L++G+ ST +FQ+G+++G +  ++L    S D   +G  S +  
Sbjct: 121 SELTRIANSTNLNGKNLIDGSASTMTFQVGSNSGASNQISLSLSASFDANTLGVGSAITI 180

Query: 180 EGKDKDWKVQAGANDITFTLKDIDGNDQTI 209
            G D      A   + + ++  ID   QTI
Sbjct: 181 VGSDS----AAAETNFSASIAAIDSALQTI 206



 Score =  106 bits (265), Expect = 7e-28
 Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 12/165 (7%)

Query: 224 TYINGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGALNMQAGTAETVDTIDV-- 281
           T ++ +   +  S N  G+  I    + +T  V  + G +  +++    +   +T+ V  
Sbjct: 117 TQMSSELTRIANSTNLNGKNLIDGSASTMTFQVGSNSGASNQISLSLSASFDANTLGVGS 176

Query: 282 --TSVGGAQQ--------SVAVIDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNA 331
             T VG            S+A IDSAL+ +++ R++LGA QNR +  ISNL NINEN +A
Sbjct: 177 AITIVGSDSAAAETNFSASIAAIDSALQTINNTRSDLGAAQNRLSSTISNLQNINENASA 236

Query: 332 SKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           +  RI+DTDFA ET  LTK Q L QAS+S+LAQA Q P+A L LL
Sbjct: 237 ALGRIQDTDFAAETAQLTKQQTLQQASTSILAQANQLPSAVLKLL 281