Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  187 bits (476), Expect = 2e-52
 Identities = 100/184 (54%), Positives = 129/184 (70%), Gaps = 1/184 (0%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV +M AQ+ L  ++    TSMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAITVNTNVTSMKAQKNLNMSSGQLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L+V +RNANDGISIAQ AEGAM E TN+LQRMRDLS+Q+ NG+NS  +  AIQ+EIT L 
Sbjct: 61  LEVGMRNANDGISIAQIAEGAMQEQTNMLQRMRDLSIQAENGANSADDLQAIQDEITQLI 120

Query: 121 DELNRIAETTSFGGNKLLNGTFST-KSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAA 179
            E+  I  +T+FG  KL+ G FS  K FQ+G   GE V +T+    + +  +   + + +
Sbjct: 121 TEITAIGNSTAFGNTKLMTGDFSAGKKFQVGHQEGEDVTITVNTNNATSLSVNAVTVLTS 180

Query: 180 EGKD 183
            G++
Sbjct: 181 AGRN 184



 Score =  110 bits (274), Expect = 6e-29
 Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 14/181 (7%)

Query: 209 ITVNAKEGDDIEEVATYINGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGALNM 268
           +++ A+ G +  +    I  +   +   +   G    F     +TGD  FS G    +  
Sbjct: 95  LSIQAENGANSADDLQAIQDEITQLITEITAIGNSTAFGNTKLMTGD--FSAGKKFQVGH 152

Query: 269 QAG------------TAETVDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRFN 316
           Q G            T+ +V+ + V +  G   S+  ID+A+K +D+ RA LGA QNR  
Sbjct: 153 QEGEDVTITVNTNNATSLSVNAVTVLTSAGRNSSLLKIDNAIKKIDTQRAALGAVQNRLA 212

Query: 317 HAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           H ISN  N   NV  +KSRI D DFAKET+A+TK+Q+L Q  S++LAQA Q P  ALSLL
Sbjct: 213 HNISNSANTQANVADAKSRIVDVDFAKETSAMTKNQVLQQTGSAMLAQANQLPQVALSLL 272

Query: 377 G 377
           G
Sbjct: 273 G 273