Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., flagellin from Rhodopseudomonas palustris CGA009

 Score =  106 bits (265), Expect = 7e-28
 Identities = 57/165 (34%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 5   VNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRGLDVA 64
           ++TN AA +A RYL   +  + +S+ +L+SG +I SA DDAAGL IS R++     L  A
Sbjct: 4   ISTNTAANSAVRYLNINSAQETSSLSKLASGSRITSASDDAAGLAISTRISSDVTTLQQA 63

Query: 65  VRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALNDELN 124
             NA+  ++I QTA+G  +  ++IL RM+ L+ +SA+G+ + S R  I  E + L+ +++
Sbjct: 64  ATNASQAVAILQTADGGASNISDILARMKSLASESASGTTTDSSRAYINSEFSQLSSQID 123

Query: 125 RIAETTSFGGNKLLNGT---FSTKSFQIGADNGEAVMLTLKDMRS 166
            IA  T +    LL+GT    S  +  +G  + +++ +TL ++++
Sbjct: 124 SIASGTRYSSQSLLDGTSVFASGVAVLVGTQSSDSITITLSNLKA 168



 Score = 87.8 bits (216), Expect = 3e-22
 Identities = 69/283 (24%), Positives = 134/283 (47%), Gaps = 25/283 (8%)

Query: 107 SERVAIQEEITALNDELNRIAETTSFGGNKLLNGTFSTKSFQIGADNGEAVMLTLKDMRS 166
           S   A    +  LN  +N   ET+S   +KL +G+  T +    +D+   + ++ + + S
Sbjct: 5   STNTAANSAVRYLN--INSAQETSSL--SKLASGSRITSA----SDDAAGLAISTR-ISS 55

Query: 167 DNRMMGGTSYVAAEGKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYI 226
           D   +   +  A++          GA++I+    DI    +++   +  G   +    YI
Sbjct: 56  DVTTLQQAATNASQAVAILQTADGGASNIS----DILARMKSLASESASGTTTDSSRAYI 111

Query: 227 NGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGALNMQAGTAET----------- 275
           N +   + + ++       ++  + + G   F+ G+A  +  Q+  + T           
Sbjct: 112 NSEFSQLSSQIDSIASGTRYSSQSLLDGTSVFASGVAVLVGTQSSDSITITLSNLKASTL 171

Query: 276 -VDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRFNHAISNLDNINENVNASKS 334
            V T+DV+S+ GA  +++ +D+A+  V S RA +GA ++RFN +  ++    +N+ ++ S
Sbjct: 172 GVSTLDVSSLSGATTALSALDTAINTVSSARASIGAQESRFNFSADSISTQTQNLQSANS 231

Query: 335 RIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSLLG 377
            IKD D A E   L+ +++ +QA+ S  A A Q P   L LLG
Sbjct: 232 AIKDVDIAAEQAKLSSAEVKTQAAVSAEAAANQMPQYLLKLLG 274