Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  178 bits (451), Expect = 2e-49
 Identities = 93/162 (57%), Positives = 122/162 (75%), Gaps = 1/162 (0%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV ++ AQ+ L  + +   TSMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAITVNTNVTSLKAQKNLNASGSNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L+V +RNAND ISIAQ +EGAM E TN+LQRMRDLS+Q+ NG+NS ++  A+++E+ AL 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQAENGANSTADLQALKDEMDALA 120

Query: 121 DELNRIAETTSFGGNKLLNGTFST-KSFQIGADNGEAVMLTL 161
            E+  I   T+FG  KLLNG FS  K+FQ+G  +GE + +++
Sbjct: 121 TEITAIGTNTAFGDTKLLNGDFSAGKTFQVGHQDGEDIKVSV 162



 Score =  104 bits (259), Expect = 3e-27
 Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 14/180 (7%)

Query: 209 ITVNAKEGDDIEEVATYINGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGALNM 268
           +++ A+ G +       +  + D +   +   G    F     + GD  FS G    +  
Sbjct: 95  LSIQAENGANSTADLQALKDEMDALATEITAIGTNTAFGDTKLLNGD--FSAGKTFQVGH 152

Query: 269 QAG------------TAETVDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRFN 316
           Q G             A +V+++ V +  G   ++  ID+A+K +D+ RA+LGA QNR  
Sbjct: 153 QDGEDIKVSVGKSDAAALSVNSLTVLTSAGRASALTKIDAAIKKIDTSRAKLGAVQNRLA 212

Query: 317 HAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           H ISN  N   NV  +KSRI D DFAKET+A+TK+Q+L Q  S++LAQA Q P  ALSLL
Sbjct: 213 HNISNSANTQANVADAKSRIVDVDFAKETSAMTKNQVLQQTGSAMLAQANQLPQVALSLL 272