Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  183 bits (465), Expect = 4e-51
 Identities = 97/184 (52%), Positives = 131/184 (71%), Gaps = 1/184 (0%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+NVNTNV +M AQ+ L  ++    TSMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAINVNTNVTSMKAQKNLNTSSQNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           L+V +RNAND ISIAQ +EGAM E TN+LQRMRDLS+QS NG+NS ++  A+++E+  L 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQSENGANSTADLQALKDEMDQLA 120

Query: 121 DELNRIAETTSFGGNKLLNGTFST-KSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAA 179
           +E+  I  +T+FG  KLL G FS  K FQ+G  +GE V +++  + +    +   + + +
Sbjct: 121 EEITAIGNSTAFGNTKLLTGEFSAGKLFQVGHQDGEDVTISVGTLNAGVLSVNSLTVLTS 180

Query: 180 EGKD 183
            G+D
Sbjct: 181 AGRD 184



 Score =  106 bits (264), Expect = 9e-28
 Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 14/181 (7%)

Query: 209 ITVNAKEGDDIEEVATYINGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAGALNM 268
           +++ ++ G +       +  + D +   +   G    F     +TG+  FS G    +  
Sbjct: 95  LSIQSENGANSTADLQALKDEMDQLAEEITAIGNSTAFGNTKLLTGE--FSAGKLFQVGH 152

Query: 269 QAGTAET------------VDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQNRFN 316
           Q G   T            V+++ V +  G   ++  ID+A+K +D+ RA+LGA QNR  
Sbjct: 153 QDGEDVTISVGTLNAGVLSVNSLTVLTSAGRDSAIGKIDAAIKVIDTQRAKLGAVQNRLA 212

Query: 317 HAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAALSLL 376
           H ISN  N   NV  +KSRI D DFAKET+ +TK+Q+L Q  S++LAQA Q P  ALSLL
Sbjct: 213 HNISNSANTQANVADAKSRIVDVDFAKETSTMTKNQVLQQTGSAMLAQANQLPQVALSLL 272

Query: 377 G 377
           G
Sbjct: 273 G 273