Pairwise Alignments

Query, 377 a.a., flagellin D from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  187 bits (475), Expect = 3e-52
 Identities = 107/236 (45%), Positives = 150/236 (63%), Gaps = 9/236 (3%)

Query: 1   MAVNVNTNVAAMTAQRYLTGATNAQQTSMERLSSGFKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV +M AQ+ L  +++   TSMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAITVNTNVTSMKAQKNLNTSSSGLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQSANGSNSKSERVAIQEEITALN 120
           LDV +RNAND ISIAQ AEGAM E TN+LQRMRDL++Q+ NG+NS  +  AIQ+EI  L+
Sbjct: 61  LDVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQAENGANSTDDLDAIQKEINQLS 120

Query: 121 DELNRIAETTSFGGNKLLNGTFST-KSFQIGADNGEAVMLTLKDMRSDNRMMGGTSYVAA 179
           +E+  I ++T+FG   L+ G FST K+FQ+G   GE + +++    + +  +   +  +A
Sbjct: 121 EEITAIGDSTAFGNTLLMTGLFSTGKTFQVGHQEGEDITISVGTTNAGSLSVNALAIASA 180

Query: 180 EGKDKDWKVQAGANDITFTLKDIDGNDQTITVNAKEGDDIEEVATYINGQTDMVKA 235
            G+           +I   +K ID  +Q   + AK+      ++   N Q ++  A
Sbjct: 181 GGR------STALANIDAAIKTID--NQRANLGAKQNRLAYNISNSANTQANVADA 228



 Score =  106 bits (265), Expect = 7e-28
 Identities = 72/185 (38%), Positives = 99/185 (53%), Gaps = 22/185 (11%)

Query: 209 ITVNAKEG----DDIEEVATYINGQTDMVKASVNEKGQLQIFAGNNKVTGDVAFSGGLAG 264
           +TV A+ G    DD++ +   IN  ++ + A     G    F     +TG   FS G   
Sbjct: 95  LTVQAENGANSTDDLDAIQKEINQLSEEITAI----GDSTAFGNTLLMTG--LFSTGKTF 148

Query: 265 ALNMQAGTAET------------VDTIDVTSVGGAQQSVAVIDSALKYVDSHRAELGAFQ 312
            +  Q G   T            V+ + + S GG   ++A ID+A+K +D+ RA LGA Q
Sbjct: 149 QVGHQEGEDITISVGTTNAGSLSVNALAIASAGGRSTALANIDAAIKTIDNQRANLGAKQ 208

Query: 313 NRFNHAISNLDNINENVNASKSRIKDTDFAKETTALTKSQILSQASSSVLAQAKQAPNAA 372
           NR  + ISN  N   NV  +KSRI D DFAKET+ +TK+Q+L Q  S++LAQA Q P  A
Sbjct: 209 NRLAYNISNSANTQANVADAKSRIVDVDFAKETSVMTKNQVLQQTGSAMLAQANQLPQVA 268

Query: 373 LSLLG 377
           LSLLG
Sbjct: 269 LSLLG 273