Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  144 bits (364), Expect = 2e-39
 Identities = 74/167 (44%), Positives = 112/167 (67%), Gaps = 2/167 (1%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA++++TN S++  Q  L+   + +  + +RL +G +INSA DDAAGLQI+ RL +  RG
Sbjct: 1   MALSIHTNYSSLITQTNLSKTNNTLGTNQQRLGTGLRINSAADDAAGLQIATRLNAGVRG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           + +A++N ND +S+ QTAEGA NE T+ILQRM+DLA QS+NG+N+  +R A++ E   L 
Sbjct: 61  MAVAIRNTNDAVSMLQTAEGAFNEATDILQRMKDLATQSANGTNTQKDRDALEAEFVELG 120

Query: 121 DELNRIAETTSFGGNKLLNGS--FGSKSFQIGADSGEAVMLSMGSMR 165
            ELN IA  T + G+ LL+G       +FQIGA S E + +++   +
Sbjct: 121 KELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADTK 167



 Score = 81.6 bits (200), Expect = 2e-20
 Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 22/167 (13%)

Query: 232 VKASVGEDGK-LQLFASSQKVNGDVTIGGG-LGGEIGFDAGRN------VTVADVNV--- 280
           ++A   E GK L   A++ K  GD  + GG L  +I F  G +      V +AD  +   
Sbjct: 112 LEAEFVELGKELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADTKIAAA 171

Query: 281 -----------STVAGSQEAVSILDGALKAVDSQRASLGAFQNRFGHAISNLDNVNENVN 329
                      S  AG+   +  L+ AL  + + R +LGA  NR  H  +NL N+ +N  
Sbjct: 172 LTQMTTTVPGLSVAAGAVATIDALETALDDLGATRGALGANINRLNHTANNLANMKDNTE 231

Query: 330 ASRSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQSPSAALSLLG 376
            ++ RI D D+A E+  MTK  +L Q+  S+L QA Q PS  + LLG
Sbjct: 232 MAKGRIMDADFASESANMTKNSMLMQSGISMLKQAGQMPSMVMGLLG 278