Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  315 bits (807), Expect = 1e-90
 Identities = 182/396 (45%), Positives = 258/396 (65%), Gaps = 24/396 (6%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA+ VNTN+ ++  QR LN +++ +  SM+RLS+G +INSA+DDAAGLQI+NRLTSQ  G
Sbjct: 1   MALTVNTNIPSLNTQRNLNSSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L +AV+NANDGIS+AQTAEGA+ ++TNILQRMRDLALQS+NGSNS+SER A+  EV  L 
Sbjct: 61  LGVAVRNANDGISLAQTAEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLK 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQE 180
            EL+RI+ TT+FGG +LL+GSFG  SFQ+G+ + E  ++S+G     ++++  K +    
Sbjct: 121 KELDRISNTTTFGGRQLLDGSFGVASFQVGSAANE--IISVGIAEMSSKSLSAKFFENTS 178

Query: 181 GKAA-DWRVGAATDLTLSYTNKQGEAREVTINAKQGDD----LEELATYINGQTEDVKAS 235
            KAA    V  A ++ + +T   G+A  VT N   GDD     +++A  IN     V A 
Sbjct: 179 PKAAVATTVTTAGEIDVGFT-VNGKAYAVTANVAVGDDEKTVNQKIAAAINDTNSGVGAF 237

Query: 236 VGEDGKLQLFASSQKVNGD---------VTIGGGLGGEIGFDAGRNVT-------VADVN 279
           V +D  L + +   +   +          T  G +   +   A   +        V+ V+
Sbjct: 238 VKDDNTLSIVSRETEAGANSLSALSIAISTTAGKIPAGVTNPAAATLAATATSQKVSGVD 297

Query: 280 VSTVAGSQEAVSILDGALKAVDSQRASLGAFQNRFGHAISNLDNVNENVNASRSRIRDTD 339
           + +   +Q+AV + D A++A+D+QRA LGA QNRF + I+NL N++ENV+A+R RI DTD
Sbjct: 298 LLSAENAQKAVLVFDKAIQAIDAQRADLGAVQNRFDNTIANLQNISENVSAARGRIEDTD 357

Query: 340 YARETTAMTKAQILQQASTSVLAQAKQSPSAALSLL 375
           +A ET  ++K QILQQA T++LAQAKQ P A LSLL
Sbjct: 358 FAAETANLSKNQILQQAGTAILAQAKQLPQAVLSLL 393