Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., Flagellin, C-terminal:Flagellin, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  172 bits (437), Expect = 8e-48
 Identities = 87/173 (50%), Positives = 129/173 (74%), Gaps = 1/173 (0%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MA+ VNTNV++++ Q+ L+ A+D +  SM RLSSG KI S++DDAAGL I+ ++ SQ +G
Sbjct: 1   MALTVNTNVTSLSVQKNLSRASDALSTSMGRLSSGLKIMSSKDDAAGLNIATKINSQIKG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
             MA+KNANDG+SIAQTAEGA+ E+TNILQRMR+LA+QS N SNS+++R A+ +E + ++
Sbjct: 61  QTMAIKNANDGMSIAQTAEGALQESTNILQRMRELAVQSRNDSNSATDRVALNKEFTQMS 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGSKSFQIGADSGEAVMLSMG-SMRSDTQAMG 172
            EL RIA +T+  G  L++GS  + +FQ+G++SG +  +S+  S   D   +G
Sbjct: 121 SELTRIANSTNLNGKNLIDGSASTMTFQVGSNSGASNQISLSLSASFDANTLG 173



 Score =  104 bits (260), Expect = 3e-27
 Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 24/293 (8%)

Query: 95  LALQSSNGSNSSSERRAIQEEVSALNDELNRIAETTSFGGNKLLNGSFGSKSFQIGADSG 154
           +AL  +    S S ++ +     AL+  + R++      G K+++    +    I     
Sbjct: 1   MALTVNTNVTSLSVQKNLSRASDALSTSMGRLSS-----GLKIMSSKDDAAGLNIATKIN 55

Query: 155 EAVMLSMGSMRSDTQAMGGKSYRAQEGKAADWRVGAATDLTLSYTNKQGEAREVTINAKQ 214
             +       +  T A+   +      + A+  +  +T++         ++R  + +A  
Sbjct: 56  SQI-------KGQTMAIKNANDGMSIAQTAEGALQESTNILQRMRELAVQSRNDSNSATD 108

Query: 215 GDDLEELATYINGQTEDVKASVGEDGKLQLFASSQKVNGDVTIGGGLGGEIGFDAGRNVT 274
              L +  T ++ +   +  S   +GK  +  S+  +   V    G   +I      +  
Sbjct: 109 RVALNKEFTQMSSELTRIANSTNLNGKNLIDGSASTMTFQVGSNSGASNQISLSLSASFD 168

Query: 275 VADVNVS---TVAGSQEA---------VSILDGALKAVDSQRASLGAFQNRFGHAISNLD 322
              + V    T+ GS  A         ++ +D AL+ +++ R+ LGA QNR    ISNL 
Sbjct: 169 ANTLGVGSAITIVGSDSAAAETNFSASIAAIDSALQTINNTRSDLGAAQNRLSSTISNLQ 228

Query: 323 NVNENVNASRSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQSPSAALSLL 375
           N+NEN +A+  RI+DTD+A ET  +TK Q LQQASTS+LAQA Q PSA L LL
Sbjct: 229 NINENASAALGRIQDTDFAAETAQLTKQQTLQQASTSILAQANQLPSAVLKLL 281