Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  183 bits (465), Expect = 4e-51
 Identities = 95/176 (53%), Positives = 131/176 (74%), Gaps = 3/176 (1%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MAI VNTNV+++ AQ+ LN +   +  SMERLSSG +INSA+DDAAGL ISNRL SQ RG
Sbjct: 1   MAITVNTNVTSLKAQKNLNASGSNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L++ ++NAND ISIAQ +EGAM E TN+LQRMRDL++Q+ NG+NS+++ +A+++E+ AL 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQAENGANSTADLQALKDEMDALA 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGS-KSFQIGADSGEAVMLSMGSMRSDTQAMGGKS 175
            E+  I   T+FG  KLLNG F + K+FQ+G   GE + +S+G  +SD  A+   S
Sbjct: 121 TEITAIGTNTAFGDTKLLNGDFSAGKTFQVGHQDGEDIKVSVG--KSDAAALSVNS 174



 Score =  110 bits (274), Expect = 6e-29
 Identities = 68/187 (36%), Positives = 101/187 (54%), Gaps = 10/187 (5%)

Query: 199 TNKQGEAREVTINAKQGDDLEELATYINGQTEDVKASVGEDGKLQLFASSQKVNGDVTIG 258
           TN     R+++I A+ G +       +  + + +   +   G    F  ++ +NGD + G
Sbjct: 86  TNMLQRMRDLSIQAENGANSTADLQALKDEMDALATEITAIGTNTAFGDTKLLNGDFSAG 145

Query: 259 -----GGLGGE-----IGFDAGRNVTVADVNVSTVAGSQEAVSILDGALKAVDSQRASLG 308
                G   GE     +G      ++V  + V T AG   A++ +D A+K +D+ RA LG
Sbjct: 146 KTFQVGHQDGEDIKVSVGKSDAAALSVNSLTVLTSAGRASALTKIDAAIKKIDTSRAKLG 205

Query: 309 AFQNRFGHAISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQSP 368
           A QNR  H ISN  N   NV  ++SRI D D+A+ET+AMTK Q+LQQ  +++LAQA Q P
Sbjct: 206 AVQNRLAHNISNSANTQANVADAKSRIVDVDFAKETSAMTKNQVLQQTGSAMLAQANQLP 265

Query: 369 SAALSLL 375
             ALSLL
Sbjct: 266 QVALSLL 272