Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  186 bits (471), Expect = 8e-52
 Identities = 94/183 (51%), Positives = 134/183 (73%), Gaps = 1/183 (0%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MAINVNTNV++M AQ+ LN ++  +  SMERLSSG +INSA+DDAAGL ISNRL SQ RG
Sbjct: 1   MAINVNTNVTSMKAQKNLNTSSQNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L++ ++NAND ISIAQ +EGAM E TN+LQRMRDL++QS NG+NS+++ +A+++E+  L 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQSENGANSTADLQALKDEMDQLA 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGS-KSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQ 179
           +E+  I  +T+FG  KLL G F + K FQ+G   GE V +S+G++ +   ++   +    
Sbjct: 121 EEITAIGNSTAFGNTKLLTGEFSAGKLFQVGHQDGEDVTISVGTLNAGVLSVNSLTVLTS 180

Query: 180 EGK 182
            G+
Sbjct: 181 AGR 183



 Score =  114 bits (284), Expect = 4e-30
 Identities = 74/186 (39%), Positives = 100/186 (53%), Gaps = 8/186 (4%)

Query: 193 DLTLSYTNKQGEAREVTINAKQGDDLEELATYINGQTE--DVKASVGEDGKLQLFASSQK 250
           DL++   N      ++     + D L E  T I   T   + K   GE    +LF    +
Sbjct: 94  DLSIQSENGANSTADLQALKDEMDQLAEEITAIGNSTAFGNTKLLTGEFSAGKLFQVGHQ 153

Query: 251 VNGDVTIGGGLGGEIGFDAGRNVTVADVNVSTVAGSQEAVSILDGALKAVDSQRASLGAF 310
              DVTI  G       +AG  ++V  + V T AG   A+  +D A+K +D+QRA LGA 
Sbjct: 154 DGEDVTISVGT-----LNAGV-LSVNSLTVLTSAGRDSAIGKIDAAIKVIDTQRAKLGAV 207

Query: 311 QNRFGHAISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQASTSVLAQAKQSPSA 370
           QNR  H ISN  N   NV  ++SRI D D+A+ET+ MTK Q+LQQ  +++LAQA Q P  
Sbjct: 208 QNRLAHNISNSANTQANVADAKSRIVDVDFAKETSTMTKNQVLQQTGSAMLAQANQLPQV 267

Query: 371 ALSLLG 376
           ALSLLG
Sbjct: 268 ALSLLG 273