Pairwise Alignments

Query, 376 a.a., flagellin B from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  183 bits (465), Expect = 4e-51
 Identities = 102/217 (47%), Positives = 146/217 (67%), Gaps = 15/217 (6%)

Query: 1   MAINVNTNVSAMTAQRYLNGAADGMQKSMERLSSGYKINSARDDAAGLQISNRLTSQSRG 60
           MAI VNTNV+++ AQ+ LN +A  +  SMERLSSG +INSA+DDAAGL ISNRL SQ RG
Sbjct: 1   MAITVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDMAVKNANDGISIAQTAEGAMNETTNILQRMRDLALQSSNGSNSSSERRAIQEEVSALN 120
           L++ ++NAND ISIAQ AEGAM E TN+LQRMRDL +QS NG+NSS++  A++ E+  L 
Sbjct: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLA 120

Query: 121 DELNRIAETTSFGGNKLLNGSFGS-KSFQIGADSGEAVMLSMGSMRSDTQAMGGKSYRAQ 179
           +E++ I +TT+FG  KLL G F + K+FQ+GA  GE + +++ +    + ++G       
Sbjct: 121 NEIDEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIKVTVKASNKSSLSVGS------ 174

Query: 180 EGKAADWRVGAATDLTLSYTNKQGEAREVTINAKQGD 216
                   +G  T    + + K+ +A   TI+A++ D
Sbjct: 175 --------LGNTTSAARASSLKKIDAAIKTIDAQRAD 203



 Score =  107 bits (267), Expect = 4e-28
 Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 34/199 (17%)

Query: 199 TNKQGEAREVTINAKQGDDLEELATYINGQTEDVKASVGEDGKLQLFASSQKVNGDVTIG 258
           TN     R++T+ ++ G +     + +  + + +   + E GK   F +++ + G     
Sbjct: 86  TNMLQRMRDLTVQSENGANSSADLSALKAEMDQLANEIDEIGKTTAFGTTKLLAG----- 140

Query: 259 GGLGGEIGFDAGRNVTVA-----DVNVSTVAGSQEAVSI-----------------LDGA 296
                  GF AG+N  V      D+ V+  A ++ ++S+                 +D A
Sbjct: 141 -------GFSAGKNFQVGAQDGEDIKVTVKASNKSSLSVGSLGNTTSAARASSLKKIDAA 193

Query: 297 LKAVDSQRASLGAFQNRFGHAISNLDNVNENVNASRSRIRDTDYARETTAMTKAQILQQA 356
           +K +D+QRA LGA QNR  H ISN  N   NV  ++SRI D D+A+ET+ MTK Q+LQQ 
Sbjct: 194 IKTIDAQRADLGAIQNRLAHNISNSANTQANVADAKSRIVDVDFAKETSQMTKNQVLQQT 253

Query: 357 STSVLAQAKQSPSAALSLL 375
            +++LAQA Q P  ALSLL
Sbjct: 254 GSAMLAQANQLPQVALSLL 272