Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., Flagellar hook-associated protein FliD from Pseudomonas fluorescens FW300-N2E2

 Score = 89.7 bits (221), Expect = 3e-22
 Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 4/191 (2%)

Query: 6   MGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFR 65
           +G+ +G D   +V  +V +++  KQ +ID        +IS  G L+  L T ++ +    
Sbjct: 9   LGLGSGLDTTAIVKALVDSDKAAKQGQIDRATKTNTANISGIGTLKSLLATFQSALESLG 68

Query: 66  QEKA--FAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKFG-- 121
              +  F      ++N   ++ TA   A++G YSV+V QLA S K+A+      A     
Sbjct: 69  STTSPQFTGVAATSANTSALTVTAGNSAVSGTYSVNVTQLATSSKVATAAFAGGASSAVE 128

Query: 122 PGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVSG 181
            G L IS   K +TLD+  ++ L  +   IN + S+ G+ A+I+ D  G RL+V S  +G
Sbjct: 129 AGTLTISQSGKDYTLDIPADATLQSVRDAINSKYSSSGLTANIVTDNFGSRLVVGSTKTG 188

Query: 182 KDHSVKMSAQA 192
               + +S  A
Sbjct: 189 AGSDISLSGIA 199



 Score = 75.9 bits (185), Expect = 4e-18
 Identities = 68/256 (26%), Positives = 119/256 (46%), Gaps = 29/256 (11%)

Query: 430 AQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRERVRNDIEQ 489
           A+D++  +DG++ ++S  N ++N I G+N+TL         P  + +  + + ++  I++
Sbjct: 223 AKDAVFTVDGLS-MTSPTNKLDNVISGLNMTL---LVAGSGPTTVTVATNADGLKASIQK 278

Query: 490 FVAAYNQFFQTSKELAGVDPRTGQAG-----PLAGDSIVRSADSRLKTVFSSSIEQAPEN 544
           FV AYN   +    L    P T   G      L GDS+ RS  + ++   S +   A + 
Sbjct: 279 FVDAYNAIAKAVTSL--TKPSTDANGNSVPAALTGDSLPRSLLAAIRAPLSET--GAGDK 334

Query: 545 LKSLTEFGITTTR-QGTLEINYAMLDRQLNNNFT--KLGEFFGGNQGFAKRVEDAISSMT 601
           L  L++ GITT +  G L+ N A     LN      ++   F G  G  +R+++A+   T
Sbjct: 335 LTVLSQLGITTNQTTGALDFNSAKFTEALNTKQLGGEVQTLFTGENGLIERMQNALKPYT 394

Query: 602 ----------GVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATS 651
                      V   +  R K+L     +L +DQ +LDRR+E+L      K++ M     
Sbjct: 395 ETGKKDSNGKPVDNILTARSKNLEILKAKLGEDQLALDRRIETLTAVLTKKYNDMDTLVG 454

Query: 652 KMQ---SQLAGMMNAL 664
           +++   S +  M  AL
Sbjct: 455 RLKATASNITSMFEAL 470



 Score = 25.4 bits (54), Expect = 0.006
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 2/142 (1%)

Query: 327 QGQKKAADVPGWSNTAS-GTLLDSYVTPQEAQQKLEQKLAQEKAQIEA-AIRSGKMTPEE 384
           QGQ   A     +N +  GTL     T Q A + L    + +   + A +  +  +T   
Sbjct: 33  QGQIDRATKTNTANISGIGTLKSLLATFQSALESLGSTTSPQFTGVAATSANTSALTVTA 92

Query: 385 AKAQARAKLSPEERAYIEQVEKAQAALNAAQSAFDGYGGMTEVQSAQDSMVVLDGVATLS 444
             +      S          + A AA     S+    G +T  QS +D  + +   ATL 
Sbjct: 93  GNSAVSGTYSVNVTQLATSSKVATAAFAGGASSAVEAGTLTISQSGKDYTLDIPADATLQ 152

Query: 445 SNNNIIENAIEGVNLTLKGKTD 466
           S  + I +      LT    TD
Sbjct: 153 SVRDAINSKYSSSGLTANIVTD 174