Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., Flagellar capping protein from Pseudomonas stutzeri RCH2

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 12/242 (4%)

Query: 425 TEVQSAQDSMVVLDGV-----ATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYD 479
           T + +A D+ + + G        L+S++N  +N IEGV+L++        P   + I+ D
Sbjct: 186 TTLSTAADARIRMGGSFGVGGIELTSSSNTFDNVIEGVSLSVNKVHKDGDPALTLTIDQD 245

Query: 480 RERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIE 539
           +   +   + FV A+N    +   L      +   G LAGDS VR+ + RL T+  +   
Sbjct: 246 KSATKGKAQSFVDAFNALMTSFDSLTASGSDSSARGALAGDSSVRAIEGRLNTLLRTDF- 304

Query: 540 QAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISS 599
                  SL  FGI+  R G L I+ A  +  +  +       F G       ++  ++S
Sbjct: 305 ----GGNSLINFGISADRNGKLTIDTARFEAAVAKDPAGFEALFTGKDNLLDSIDKTVAS 360

Query: 600 MTGVT-GSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQLA 658
            T  T G ++ R  +L+    R ++    L ++ +S   R   +F++M      M+ Q  
Sbjct: 361 YTSSTNGMLKNRMDTLDMNLRRTNEQFDKLQQQYDSHYSRYLKQFTSMMQTMQNME-QTF 419

Query: 659 GM 660
           GM
Sbjct: 420 GM 421



 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 14  INGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQEKA-FAV 72
           I  M +++ + E      R++   +N  T   A  +LR SL T K+ ++  +  KA   V
Sbjct: 8   IKQMSTQLATYEVQSSLDRLNRNESNYKTQRDALSKLRTSLTTFKSAVSGLKTGKATMLV 67

Query: 73  RKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKFGPGKLHISLGDK 132
               TS E  VSAT   +A AG+Y   V QLA   ++A + L   A  G     ++L D+
Sbjct: 68  NSATTSQEGYVSATVGAKAQAGSYQFYVEQLASKQQVAVQGLVDGALSGT----LNLKDQ 123

Query: 133 SFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVSG 181
           +F L     + L D  + IN   ++ GV+A+++       L++ S  SG
Sbjct: 124 TFNLGAY--ATLEDAAKAINA-SADLGVQATLVRSNGEVSLVLTSTESG 169