Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., Flagellar capping protein from Pseudomonas stutzeri RCH2

 Score =  127 bits (319), Expect = 1e-33
 Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 12/251 (4%)

Query: 419 DGYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEY 478
           DG  G+  +  A+D+++ +DG+ T++   N I++AIEGV L LKG  D  +P   +G+  
Sbjct: 218 DGSAGV--ITQARDAVLTIDGL-TVTRKTNSIDDAIEGVTLELKGLVDEKEP-LTVGVTL 273

Query: 479 DRERVRNDIEQFVAAYNQFF-----QTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTV 533
           D   V+  I+ F  AYN+       QT     G + +    G L GD+  R+  + ++  
Sbjct: 274 DETGVKQQIQSFADAYNKLIGVINAQTKVTSVG-EGKAPVTGALVGDATARTLLNTIRNE 332

Query: 534 FSSSIEQAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRV 593
             S   Q    +++LT+ G+TT + GTL+++   L + ++ NF +L E F G +G A R+
Sbjct: 333 LVSV--QGSGGIRALTDIGVTTQKDGTLKVDSDKLSKVVSANFAELSELFAGEKGLATRL 390

Query: 594 EDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKM 653
           ++ +   T   G +  R K + E   ++D  +  LDRR+ SL+ R + +F+AM     KM
Sbjct: 391 DEKLKPYTQTGGILEQRNKVMTETISKIDKQKVDLDRRITSLQDRLYKQFNAMDALVGKM 450

Query: 654 QSQLAGMMNAL 664
            S  + ++ +L
Sbjct: 451 ASTSSSLLASL 461



 Score =  103 bits (257), Expect = 2e-26
 Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 8/193 (4%)

Query: 4   GPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQ 63
           G  G+ +G DI+ +V  +V+AER PK+ ++    +   T I+A G L+ ++   +  +  
Sbjct: 3   GVTGIGSGIDIDSIVKSMVAAERAPKESQLKTLESKTTTRITAIGALKSAITEFQTALGN 62

Query: 64  FRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDA----K 119
             + + F  R   +SN  ++S  A   A AG+Y V V QLA   KIA +    DA     
Sbjct: 63  LNKPEVFKARAASSSNADLLSVKAGVTAGAGSYKVAVSQLASGSKIALQAFKNDAANPVA 122

Query: 120 FGPGKLHISLGDKS---FTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVA 176
            G G L IS+GD      T+D + N+ L  I   IN   ++ GV A+I+ D  G RL+++
Sbjct: 123 LGAGTLRISVGDSELLPITVD-ESNNTLAGIRDAINKAGADKGVSATIVTDDVGSRLVLS 181

Query: 177 SNVSGKDHSVKMS 189
           S+ +GK+ ++ ++
Sbjct: 182 SSTTGKEENITVA 194