Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN from Pseudomonas syringae pv. syringae B728a

 Score = 92.4 bits (228), Expect = 4e-23
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 4/187 (2%)

Query: 7   GMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQ 66
           G+ +G  I  +V  +V AE+ PKQ +ID +  +   S+S   +L  +L   +  +     
Sbjct: 10  GIGSGLAIGSIVEGLVGAEKAPKQNQIDKQSASTTASLSGVSQLTSALAAFQKTLDTLAS 69

Query: 67  EK--AFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLD--KDAKFGP 122
               AF      +SNE VV ATA   A+ G+Y+++V QLA   K+A+  LD  + +    
Sbjct: 70  STTPAFQGFAATSSNEAVVKATAGNTAVNGSYAINVSQLATPSKVATAALDSTQSSAIPS 129

Query: 123 GKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVSGK 182
           G L I+     + + +   S L ++   +N      G+ A+IIND  G RL+ +S  +GK
Sbjct: 130 GTLKITQNGTDYNVAIDKTSTLQEVRDKVNSTLQGKGITANIINDNNGSRLVFSSTTTGK 189

Query: 183 DHSVKMS 189
              + ++
Sbjct: 190 GSDISVT 196



 Score = 25.8 bits (55), Expect = 0.005
 Identities = 49/252 (19%), Positives = 93/252 (36%), Gaps = 21/252 (8%)

Query: 32  RIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQEKAFAVRKVDTSNEQVVSATATTEA 91
           +I    T+ + +I     L+E  D + + +    Q K      ++ +N   +  ++TT  
Sbjct: 133 KITQNGTDYNVAIDKTSTLQEVRDKVNSTL----QGKGITANIINDNNGSRLVFSSTTTG 188

Query: 92  IAGNYSVDVLQLAQSHKIASEVLDKDAKFGPGKLHISLGDKSFTLD-VQGNSKLVDIVRG 150
              + SV      ++  I    L  ++  G G +     D +FT+D +   SK   +   
Sbjct: 189 KGSDISVTGASGQEALNIDGTKLMSESSTGAGAITAVAKDAAFTVDGLSLTSKTNTVSTA 248

Query: 151 INGEKSNPGVRASIINDVEGPRLIVASNVSGKDHSVKMSAQAEPGNPLKQLEYKTLEQRV 210
           I+G        ++         + VA+N  G   S++    +          Y TL   V
Sbjct: 249 ISGLTFELVAPSASSAPSASTTVTVATNTDGLKTSLQSFVDS----------YNTLVSLV 298

Query: 211 RDLEKAR--AQAQQLIAPLTPEQ--QKVAAKVAEKIGDAARLVDQEVAQEIRSAAQSAQG 266
             L K    +Q +   A LT +   + + A + ++I  A          ++    Q + G
Sbjct: 299 SSLTKGTVDSQGKYTAAALTGDSAPRALLATIRDQIATATSNAGLSSLAQLGIKTQQSDG 358

Query: 267 AAGEALNAGELT 278
                L+  ELT
Sbjct: 359 KL--TLSTTELT 368