Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., flagellar hook-associated protein FliD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  118 bits (296), Expect = 5e-31
 Identities = 62/197 (31%), Positives = 107/197 (54%), Gaps = 1/197 (0%)

Query: 1   MSLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNL 60
           M++   GM +G DI+ +V  +V AE+ PK+   +    +I   +SA G L+ +L T ++ 
Sbjct: 1   MAISATGMGSGLDISNIVKVLVDAEKAPKEAMFNKTEDSIKAKVSAMGTLKSALSTFQDA 60

Query: 61  MTQFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIA-SEVLDKDAK 119
           + + +   A   RK+  S +  +SA A   A AG+Y + V Q+A +HKIA + V D    
Sbjct: 61  VKKLQTGDALNQRKISVSTDAYLSAKAEKTAQAGSYGIKVEQVATNHKIAGTNVADATQP 120

Query: 120 FGPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNV 179
            G G L   +  KSF++D+     L +I + +N    N GV A++I    G RL+ ++N 
Sbjct: 121 VGEGSLAFGVNGKSFSVDIAATDSLAEIAKKVNEASDNVGVTATVITSDAGSRLVFSANK 180

Query: 180 SGKDHSVKMSAQAEPGN 196
           +G+D+ + ++A    G+
Sbjct: 181 TGEDNQISLTATNTSGS 197



 Score =  112 bits (279), Expect = 5e-29
 Identities = 71/246 (28%), Positives = 124/246 (50%), Gaps = 4/246 (1%)

Query: 420 GYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYD 479
           G G  + +Q A+++++ +DG   ++S +N ++NAI GV L L            + IE D
Sbjct: 204 GSGNTSTLQDAKNAVLYIDG-QKVTSQSNEVKNAITGVTLNLTNADVAKT--TTVKIEQD 260

Query: 480 RERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIE 539
            E V+ +++ FV AYN    T  +++  D     A  L GDS++RS +S+L++V S  + 
Sbjct: 261 NEAVKTNVQAFVDAYNSLVTTIDKMSSYDKDKKTAAALQGDSMIRSIESQLRSVASGRVP 320

Query: 540 QAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFG-GNQGFAKRVEDAIS 598
            A     +L + GI   R G L ++   L++ L  + + +   F   ++G A R  D  +
Sbjct: 321 TADGGSIALYDIGIKADRYGKLSVDDTKLNKALTEDMSSVEALFATPDKGLANRFNDLAN 380

Query: 599 SMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQLA 658
           S    +G I  R+ S   Q  RL D + +   +M+ L  R   +F+AM     K+  Q +
Sbjct: 381 SYVKSSGLIADRQSSYTTQQSRLADQRAAFTLKMDQLTARLTKQFNAMDLVVGKLNQQSS 440

Query: 659 GMMNAL 664
           G+++ L
Sbjct: 441 GLVDRL 446



 Score = 25.4 bits (54), Expect = 0.006
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 10  TGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTM----KNLMTQFR 65
           TG  +N   + +     V  +Q  +  +TN+   + AY  L  ++D M    K+  T   
Sbjct: 238 TGVTLNLTNADVAKTTTVKIEQDNEAVKTNVQAFVDAYNSLVTTIDKMSSYDKDKKTAAA 297

Query: 66  QEKAFAVRKVDTSNEQVVSATATT 89
            +    +R +++    V S    T
Sbjct: 298 LQGDSMIRSIESQLRSVASGRVPT 321