Pairwise Alignments

Query, 666 a.a., flagellar hook-associated protein 2 from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., flagellar filament capping protein FliD from Ralstonia sp. UNC404CL21Col

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 34/217 (15%)

Query: 7   GMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQ 66
           G+ T  D+N +V+K++ AE      R   ++    T +SA G L+ +L T +  M     
Sbjct: 18  GIGTNIDVNNLVTKLMQAESKGMTLRQTQQKA-FQTQLSAVGSLKSALSTFQTAMAALNN 76

Query: 67  EKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKI--ASEVLDKDAKFG--P 122
              F   K    +  +++A+ +  A AG Y V+V QLAQ+  +  A +   K    G  P
Sbjct: 77  PDTFTGNKASGHDTSILTASLSNTAPAGTYQVNVTQLAQAQVLSAAGQTSSKTPIGGGTP 136

Query: 123 GKLHISLGD------------------------KSFTLDVQGNSKLVDIVRGINGEKSNP 158
             L  S G                          S T+D   N+ L  I   IN   +N 
Sbjct: 137 TTLTFSFGSVSGGSFANGKYTGATFTQNGNQAGGSITID-PSNNTLAGIRDAIN--NANV 193

Query: 159 GVRASIIND-VEGP-RLIVASNVSGKDHSVKMSAQAE 193
           GV ASI+ND  + P RL++ S   G +  +K++   +
Sbjct: 194 GVSASIVNDGSDSPYRLVLTSTAGGANSEMKIAVSGD 230



 Score = 52.0 bits (123), Expect = 9e-11
 Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 420 GYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYD 479
           G   MTEV + +++M  ++G+   S+ N + +  ++G + TL  KT        + +  D
Sbjct: 243 GTQNMTEVATGRNAMATVNGINVQSATNTLTD-VVDGTSFTL-AKTGSTT----VTVGSD 296

Query: 480 RERVRNDIEQFVAAYNQFFQTSKELAGVDPRT-GQAGPLAGDSIVRSADSRLKTVFSSSI 538
             +    +  FV AYN        L   D       G LAGD   ++  ++L  V    I
Sbjct: 297 AGQASQSVLNFVKAYNALRIQLNALTKFDTANPANNGALAGDVSTKAMINQLTDVLGQGI 356

Query: 539 EQAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGG 585
                  +SL   G+T  ++GTL I+ A L   L  + +++   F G
Sbjct: 357 GNGA--FQSLGSIGVTMDKEGTLSIDDAKLTAALKKSPSQVAALFAG 401



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 53/303 (17%), Positives = 107/303 (35%), Gaps = 43/303 (14%)

Query: 376 RSGKMTPEEAKAQARAKLSPEERAYIEQVEKAQAALNAAQSAFDGYGGMTEVQSAQDSMV 435
           + G ++ ++AK  A  K SP       QV    A    A  +       +    A    +
Sbjct: 373 KEGTLSIDDAKLTAALKKSPS------QVAALFAGTGTATDSLLKVSSFSTTTQAGSYAI 426

Query: 436 VLDGVATLSS-------NNNIIENAIEGVNLTLKGKTDRNQPPA--------------EI 474
            +  +AT  S       N  I     + +++TL G T   Q PA              +I
Sbjct: 427 NVTQLATQGSLKGSAAANTTIQSGVNDSLSVTLSGITTNIQVPAGSYTASSLAAQIQSQI 486

Query: 475 GIEYDRERVRNDIEQFVAAYNQFFQTSKELAGVDPRT----GQAGPLAGDSIVRSADSRL 530
               D +R + ++     A      T K+   V   +    G A  L G     +     
Sbjct: 487 NASPDLQRAKVEVAIGTDANGVLTLTDKQYGSVSTVSVSGNGAASLLGGSPTATAGRDVQ 546

Query: 531 KTVFSSSIEQAPENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFA 590
            T+  ++   + +NL     +G + T    L +   +    L +  T   +     +G+A
Sbjct: 547 GTINGAAATGSGQNL-----YGASGTAVDGLRVQ--VTGGALGDRGTVTVQ-----RGYA 594

Query: 591 KRVEDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDAT 650
            ++     ++    G ++    +LN     L      + +++++ +   +A+F+A+    
Sbjct: 595 AQLHTVSGNLLSNNGMVQNASDALNSSITSLGKQIDLMQKQLDAKQALYYAQFNALSKVV 654

Query: 651 SKM 653
           + M
Sbjct: 655 ASM 657