Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Flagellar regulatory protein FleQ from Pseudomonas fluorescens FW300-N2E2

 Score =  452 bits (1162), Expect = e-131
 Identities = 264/499 (52%), Positives = 327/499 (65%), Gaps = 38/499 (7%)

Query: 6   KLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGG--------CIL-GSL 56
           K+L+I+DD+  R +L+VIL F+GE     E+      +W    G         C+L G++
Sbjct: 6   KILLIDDDSVRRRDLAVILNFLGE-----ENLPCGSHDWQQAVGSLSSSREVICVLIGTV 60

Query: 57  RGQALSEQLIQSL-TKANHIP-LLVANKQPYSLEEFPN--YVGELDFPLNYPQLSDALRH 112
              A    L+++L T    +P LL+       L E      +  L+ P +Y +L D+L  
Sbjct: 61  NAPATLLGLLKTLSTWDEFLPVLLMGENSSLDLPEDQRRRVLSTLEMPPSYSKLLDSLHR 120

Query: 113 CKEFLGRKGFQVLATA---RKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGT 169
            + +  R+ +         R+  LFRSLVG S  IQ VR +++QV+ T+A+VLILGESGT
Sbjct: 121 AQVY--REMYDQARERGRHREPNLFRSLVGTSRAIQHVRQMMQQVADTDASVLILGESGT 178

Query: 170 GKEVVARNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAE 229
           GKEVVARN+HYHS RR  PFVP+NCGAIPAELLESELFGHEKGAFTGAIT+R GRFELA 
Sbjct: 179 GKEVVARNLHYHSKRREAPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELAN 238

Query: 230 GGTLFLDEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQK 289
           GGTLFLDEIGDMP+ MQVKLLRVLQER FERVG N T   +VR+IAATH+NLE MI+   
Sbjct: 239 GGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQSVDVRIIAATHKNLESMIEVGS 298

Query: 290 FREDLYYRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMMEHDW 349
           FREDLYYRLNVFPIEM  LR+R++DIPLL+ EL++RME E    I F   AI S+  H W
Sbjct: 299 FREDLYYRLNVFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSAAIMSLCRHGW 358

Query: 350 PGNVRELANLVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEG 409
           PGNVRELANLVERM I++P  ++ VN LP K+RY D  + Q   S  S +E  ER  + G
Sbjct: 359 PGNVRELANLVERMAIMHPYGVIGVNELPKKFRYVDDEDEQMVDSLRSDLE--ERVAING 416

Query: 410 IFAEDFNFEEPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADM 469
                          PD  A   LPPEG++LK+ L  LE  LI QAL+   G+VARAA+ 
Sbjct: 417 -------------HTPDFTANALLPPEGLDLKDYLGGLEQGLIQQALDDANGIVARAAER 463

Query: 470 LGMRRTTLVEKMRKYNMQR 488
           L +RRTTLVEKMRKY M R
Sbjct: 464 LRIRRTTLVEKMRKYGMSR 482