Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens FW300-N2E2

 Score =  246 bits (629), Expect = 1e-69
 Identities = 149/355 (41%), Positives = 208/355 (58%), Gaps = 31/355 (8%)

Query: 137 LVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVARNIHYHSGRRNGPFVPINCGA 196
           L+G S         + +V+ T A VL+ GESG GKE+ AR +H  S RR+GPF+ +NC A
Sbjct: 255 LIGASAAFNAATQALRRVALTPATVLVSGESGVGKEMFARQLHQLSRRRDGPFIALNCAA 314

Query: 197 IPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMSMQVKLLRVLQER 256
           IP  L+E+ELFG E+GA+TGA  +R GRFE A GGTLFLDEI  + ++ Q KLLR LQER
Sbjct: 315 IPDNLIEAELFGVERGAYTGATHSRPGRFERAHGGTLFLDEITCLSLAGQSKLLRALQER 374

Query: 257 CFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIEMPALRDRIDDIP 316
             ER+GG   IK +VRV+AAT+ +L + +    FREDL+YRLNV+PI +P LR+R DDIP
Sbjct: 375 EIERIGGGHGIKVDVRVVAATNIDLRKAVADGAFREDLFYRLNVYPIALPPLRERRDDIP 434

Query: 317 LLLQELMTRMEAE-GAQPICFTPRAINSMMEHDWPGNVRELANLVER-MVILYPNSLVDV 374
           LL+   + R   E G  P+  T RA+  ++ +D+PGNVREL NL+ER ++       +D+
Sbjct: 435 LLINAFLKRFCQEYGRTPMGLTMRALKVLLRYDFPGNVRELQNLIERGLIASEEGQAIDL 494

Query: 375 NHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFEEPQEFVPDIDAPQALP 434
            HL   +R   +P           V+    D+  G+        +P E       P  L 
Sbjct: 495 VHL---FRNEQLP-----------VDAYSVDLHGGLSPMGTAANDPAE------KPALLQ 534

Query: 435 PEGVNLKELLAD-----LEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMRKY 484
               +L +L +D     LE  LIN+AL+   G +A AA  LG+ R     +++K+
Sbjct: 535 ----SLSQLDSDFSIDGLESRLINEALQLSSGNLAAAARSLGLSRAQFAYRLKKH 585