Pairwise Alignments

Query, 488 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  244 bits (622), Expect = 6e-69
 Identities = 154/371 (41%), Positives = 207/371 (55%), Gaps = 12/371 (3%)

Query: 6   KLLVIEDDAAIRLNLSVILEFVGEQCEVIESTQIDQINWSAVWGGCILGSLRGQALS--E 63
           ++L+I+DD  +R  LS  L+  G +   +   +       A W G ++  +R   +   E
Sbjct: 12  QVLLIDDDPHLRQALSQTLDLAGLKVASLGDARELAARLPADWPGVVVSDIRMPGIDGLE 71

Query: 64  QLIQSLTKANHIP-LLVANKQPYSLEEFPNYVGELDF---PLNYPQLSDALRHCKEF--- 116
            L Q   + + +P +L+       L       G  DF   P     L D++R        
Sbjct: 72  LLQQLRARDSELPVILITGHGDIQLAVQAMRAGAYDFLEKPFPSEALLDSVRRALALRQL 131

Query: 117 -LGRKGFQVLATARKNTLFRSLVGQSMGIQEVRHLIEQVSTTEANVLILGESGTGKEVVA 175
            L  +  + LA A +  L   L+GQS  +  +R  I  ++ T+A+VLILGE+G GKEVVA
Sbjct: 132 VLDNRSLR-LALADRQQLSARLLGQSKAMLRLREQIGALAGTQADVLILGETGAGKEVVA 190

Query: 176 RNIHYHSGRRNGPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFL 235
           R +H  S RRNGPFV IN GA+   ++ESELFGHE GAFTGA   R G+FE A GGTLFL
Sbjct: 191 RALHDLSNRRNGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFL 250

Query: 236 DEIGDMPMSMQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLY 295
           DEI  M + +QVKLLR+LQER  ER+GGN +I  ++RVIAAT  +L    D  +FR DLY
Sbjct: 251 DEIESMSLDVQVKLLRLLQERVVERLGGNQSIALDIRVIAATKEDLRVAADQGRFRADLY 310

Query: 296 YRLNVFPIEMPALRDRIDDIPLLLQELMTRMEAEGAQPIC-FTPRAINSMMEHDWPGNVR 354
           YRLNV P+ +P LR+R +DI LL Q            PI    P    +++ H WPGNVR
Sbjct: 311 YRLNVAPLGIPPLRERNEDILLLFQHFAEAGAQRHGLPIRELQPEQRAALLRHAWPGNVR 370

Query: 355 ELANLVERMVI 365
           EL N  ER  +
Sbjct: 371 ELQNTAERFAL 381



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 427 IDAPQALPPEGV----NLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLVEKMR 482
           +D P A P   V    NL E +   E  LI   L    G +   A+ LG+ R TL +K+R
Sbjct: 387 LDQPGAEPTSSVAGTGNLSEQVEAFERALIAAELNRPHGSLRSVAEALGVPRKTLHDKLR 446

Query: 483 KYNM 486
           K+ +
Sbjct: 447 KHGL 450